Metagenome-assembled genome: S-Fe16_120417.39_1677... - BioSample

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Result Filters

Organism: Erysipelotrichales bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; unclassified Erysipelotrichales

Attributes

broad-scale environmental context	mouse digestive system
collection date	2012-01-01
environmental medium	feces
geographic location	Sweden
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	A Catalogue of the Mouse Gut Metagenome
sample name	S-Fe16_120417.39_1677756531
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112716422
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T00:25:39Z
INSDC last update	2023-03-06T00:25:39Z
INSDC status	public
Submitter Id	S-Fe16_120417.39_1677756531
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	80.53
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	57.69745
geographic location (longitude)	11.98583
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMEA3134527
scientific_name	Erysipelotrichales bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR675485 of study ERP008710.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
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