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Metagenome-assembled genome: ERR5094887_bin.1_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA111477177; SRA: ERS13571213
Organism
Kluyvera intermedia
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera
Attributes
broad-scale environmental contextRainbow trout digestive system
collection datenot provided
environmental mediumGut content
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcefish gut metagenome
project nameShotgun metagenomics sequencing results for intestinal samples collected from rainbow trout farms in three European countries.
sample nameERR5094887_bin.1_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-16
ENA-LAST-UPDATE2022-10-16
External IdSAMEA111477177
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-16T20:28:46Z
INSDC last update2022-10-16T20:28:46Z
INSDC statuspublic
Submitter IdERR5094887_bin.1_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score67.38
completeness softwareCheckM
contamination score0.41
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextGut
metagenomic sourcefish gut metagenome
sample derived fromSAMEA7816542
sequencing methodNextSeq 550
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera intermedia
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR5094887 of study ERP126324.

BioProject
PRJEB56417
Retrieve all samples from this project

Submission
EBI; 2022-10-18
Accession:
SAMEA111477177
ID:
31336662

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