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MIMARKS Specimen sample from human oral metagenome

Identifiers
BioSample: SAMN31209974; Sample name: M031_saliva_Allbac; SRA: SRS15352716
Organism
human oral metagenome
unclassified entries; unclassified sequences; metagenomes; organismal metagenomes
Package
MIMARKS: specimen, human-oral; version 6.0
Attributes
host subject idM031
isolation and growth conditionnot applicable
ecotypenot applicable
broad-scale environmental contextUrban Biome ENVO:01000249; Human
local-scale environmental contexthuman-associated habitat ENVO:00009006
environmental mediumsaliva material ENVO:02000039
geographic locationUSA: Oregon, Salem
latitude and longitude44.9429 N 123.0351 W
collection date2016/2018
hostHomo sapiens
host age66
host body mass index20.08149548
host diseaseaxial spondyloarthritis
host sexfemale
racewhite
ethnicitynot hispanic or latino
library_idms551_s129
misc_param_biologic_usenaive
misc_param_nsaids_useno
misc_param_basdai_score1.75
misc_param_uveitis_activityinactive
misc_param_b27_positivityTrue
misc_param_iga_fractionAllbac
samp_dna_conc98
dna_extractionQiagen DNeasy Blood & Tissue Kit
Description

=CONCATENATE("16S V4 amplicon sequencing of IgA sorted saliva, ",Y5," fraction")

Keywords: GSC:MIxS;MIMARKS:6.0

BioProject
PRJNA873789
Retrieve all samples from this project

Submission
Oregon Health & Science University, Lisa Karstens; 2022-10-07
Accession:
SAMN31209974
ID:
31209974

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