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Animal sample from Mesoplodon densirostris (Blainville's beaked whale) for VGP reference genome, mMesDen1

Identifiers
BioSample: SAMN29828597; Sample name: Animal sample from Mesoplodon densirostris (Blainville's beaked whale) for VGP reference genome, mMesDen1; SRA: SRS18782499
Organism
Mesoplodon densirostris (Blainville's beaked whale)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Ziphiidae; Mesoplodon
Package
Model organism or animal; version 1.0
Attributes
isolatemMesDen1
development stageadult
sexmale
tissuemuscle
biomaterial providerSan Diego Zoo Wildlife Alliance/Hubbs SeaWorld Research Institute
cell typecultured fribroblasts from skin
collected byJudy St. Leger
collection date2011-01-11
geographic locationUSA: Florida, Melbourne Beach
latitude and longitude27.883333 N 80.457294 W
storage conditionsliquid nitrogen
treatmentestablished a cell line
Description

The Blainville's beaked whale (Mesoplodon densirostris) is a species of beaked whale in the family Ziphiidae. Sometimes known as the "dense-beaked whale," this species is typically found in deep, offshore, tropical to temperate waters worldwide (NOAA website). The tissue sample from a stranded male was sent from Hubbs SeaWorld Research Institute in Orlando, Florida to San Diego Zoo Wildlife Alliance (SDZWA) in 2011 in order to establish a cell line that could be banked in SDZWA's Frozen Zoo. The sample was cultured and frozen by the SDZWA Frozen Zoo Cell Culture Team and later provided to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. This assembly is under the limited use G10K embargo policy from the date of submission: https://genome10k.ucsc.edu/data-use-policies/

BioProjects
PRJNA1021954 Mesoplodon densirostris isolate:mMesDen1
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PRJNA873679 Mesoplodon densirostris isolate:mMesDen1
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PRJNA873668 Mesoplodon densirostris isolate:mMesDen1
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PRJNA516733 Various_Species
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Submission
G10K, Erich Jarvis; 2022-07-19
Accession:
SAMN29828597
ID:
29828597

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