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Metagenome-assembled genome: TExLpaSOZA_bin.9.MAG

Identifiers
BioSample: SAMEA110089364; SRA: ERS12188181
Organism
Chryseobacterium taklimakanense
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium
Attributes
collection date2014-05-16
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman skin
environmental mediumskin
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman skin
project nameSkin Microbial Genome Catalogue
sample nameTExLpaSOZA_bin.9.MAG
ENA first public2022-06-13
ENA last update2022-06-13
ENA-CHECKLISTERC000047
External IdSAMEA110089364
INSDC center aliasNIH/NHGRI
INSDC center nameNIH/NHGRI
INSDC first public2022-06-13T04:18:29Z
INSDC last update2022-06-13T04:18:29Z
INSDC statuspublic
Submitter IdTExLpaSOZA_bin.9.MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v.3.13.0
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning softwaremetaWRAP v1.2.1
completeness score100
completeness softwareCheckM v1.1.2
contamination score100
geographic location (latitude)38.984653
geographic location (longitude)-77.09471
metagenomic sourcehuman skin metagenome
sample derived fromSAMN04360112,SAMN04360113,SAMN04360114,SAMN04360115,SAMN04360116,SAMN04360117,SAMN04360118,SAMN04360119,SAMN04360120,SAMN04360121,SAMN04360122,SAMN04360123,SAMN04360124,SAMN04360125,SAMN04360126,SAMN04360127,SAMN04360128
sequencing methodIllumina
taxonomic identity markermulti-marker approach
Description

This sample represents a Pool HV Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3189155,SRR3189156,SRR3189157,SRR3189158,SRR3189159,SRR3189160,SRR3189161,SRR3189162,SRR3189163,SRR3189164,SRR3189165,SRR3189166,SRR3189167,SRR3189168,SRR3189169,SRR3189170,SRR3189171,SRR3189172,SRR3189173,SRR3189174,SRR3189175,SRR3189176,SRR3189177,SRR3189178,SRR3189179,SRR3189180,SRR3189181,SRR3189182,SRR3189183,SRR3189378,SRR3189379,SRR3189380,SRR3189381,SRR3189382,SRR3189383,SRR3189384,SRR3189385,SRR3189386,SRR3189387,SRR3189388,SRR3189389,SRR3189390,SRR3189391,SRR3189392,SRR3189393,SRR3189394,SRR3189395,SRR3189396,SRR3189397,SRR3189398,SRR3189399,SRR3189400,SRR3189401,SRR3189402,SRR3189403,SRR3189404,SRR3189405,SRR3189406,SRR3189407,SRR3189408,SRR3189409,SRR3189410,SRR3189411,SRR3189412,SRR3189413,SRR3189414,SRR3189415,SRR3189416,SRR3189417,SRR3189418,SRR3189419,SRR3189420,SRR3189421,SRR3189422,SRR3189423,SRR3189424,SRR3189425,SRR3189426,SRR3189427,SRR3189428,SRR3191602,SRR3191603,SRR3191604,SRR3191605,SRR3191606,SRR3191607.

BioProject
PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

Submission
EBI; 2022-06-14
Accession:
SAMEA110089364
ID:
29024896

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