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ihfA_stat_1

Identifiers
BioSample: SAMEA6813496; SRA: ERS4541139
Organism
Dickeya dadantii
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya
Attributes
sample nameE-MTAB-9025:ihfA_stat_1
strain3937
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2021-02-11T04:13:56Z
ENA-LAST-UPDATE2020-05-04T23:13:32Z
External IdSAMEA6813496
INSDC center nameINSA Lyon
INSDC first public2021-02-11T04:13:56Z
INSDC last update2020-05-04T23:13:32Z
INSDC statuspublic
Submitter IdE-MTAB-9025:ihfA_stat_1
broker nameArrayExpress
growth conditionM63+G, transition to stationary phase
scientific_nameDickeya dadantii
Description

Protocols: Cells were collected in exponential phase (OD=0.2 at 600nm) or transition to stationary phase (OD=0.9-1.2 for glucose, OD=1.9-2.2 for glucose+PGA,at 600nm). Growth in minimal medium M63 supplemented with sucrose (0.2% wt/vol) Treated samples were subjected to 15 min novobiocin shock (100 ug/ml) Total RNA from each D. dadantii sample was isolated using the frozen acid phenol method (Maes et Messens 1992), and submitted to Vertis Biotechnologie AG for ribosomal depletion (Illumina RiboZero kit) and RNA fragmentation. Strand-specific cDNA libraries were constructed by Vertis Biotechnologie AG.

BioProject
PRJEB38153 Transcriptomic response of Dickeya dadantii ihfA mutant to DNA relaxation by novobiocin
Retrieve all samples from this project

Submission
EBI; 2021-02-14
Accession:
SAMEA6813496
ID:
17912417

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