TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7449258; SRA: ERS5207453

Organism: Eubacterium sp. CAG:38
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1952607843_MAG67
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:09:58Z
ENA-LAST-UPDATE	2020-10-15T11:04:46Z
External Id	SAMEA7449258
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:09:58Z
INSDC last update	2020-10-15T11:04:46Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1952607843_MAG67
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	93.06
completeness software	CheckM;v1.0.13
contamination score	0.00
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408110,SAMN09408110,SAMN09408689,SAMN09409764,SAMN09411395,SAMN09411395,SAMN09411955,SAMN09413434,SAMN09413732,SAMN09413732,SAMN09414957,SAMN09416211,SAMN09416517,SAMN09417474,SAMN09417550,SAMN09418349,SAMN09418751,SAMN09419838,SAMN09420152,SAMN09420175,SAMN09420322,SAMN09420322,SAMN09420744
scientific_name	Eubacterium sp. CAG:38
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1952607843: SRR7563207,SRR7563208,SRR7559869,SRR7568738,SRR7557301,SRR7557300,SRR7568438,SRR7562466,SRR7561383,SRR7561384,SRR7558106,SRR7566690,SRR7558283,SRR7569604,SRR7558564,SRR7557949,SRR7565179,SRR7560446,SRR7568727,SRR7559757,SRR7568476,SRR7568475,SRR7564463

Submission: EBI; 2021-02-02

Accession:: SAMEA7449258
ID:: 17759934

BioSample

National Center for Biotechnology Information

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