TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7449150; SRA: ERS5207345

Organism: Eubacterium sp. AF16-48
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1949420417_MAG110
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:09:59Z
ENA-LAST-UPDATE	2020-10-15T11:03:00Z
External Id	SAMEA7449150
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:09:59Z
INSDC last update	2020-10-15T11:03:00Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1949420417_MAG110
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	95.73
completeness software	CheckM;v1.0.13
contamination score	1.03
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408061,SAMN09408259,SAMN09408670,SAMN09409119,SAMN09409349,SAMN09410160,SAMN09410443,SAMN09410838,SAMN09411949,SAMN09412006,SAMN09412024,SAMN09412317,SAMN09412678,SAMN09412773,SAMN09413704,SAMN09413991,SAMN09414036,SAMN09414083,SAMN09414537,SAMN09414573,SAMN09414844,SAMN09415190,SAMN09415388,SAMN09415505,SAMN09416118,SAMN09416296,SAMN09416468,SAMN09416565,SAMN09416628,SAMN09418242,SAMN09418256,SAMN09418267,SAMN09418731,SAMN09419115,SAMN09419549,SAMN09419602,SAMN09419812,SAMN09420361,SAMN09420535,SAMN09421039
scientific_name	Eubacterium sp. AF16-48
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1949420417: SRR7560789,SRR7566392,SRR7564242,SRR7568189,SRR7569277,SRR7567958,SRR7569159,SRR7564770,SRR7558916,SRR7565729,SRR7561505,SRR7565382,SRR7564172,SRR7560559,SRR7566476,SRR7568390,SRR7563475,SRR7567385,SRR7562596,SRR7558337,SRR7564503,SRR7562380,SRR7560194,SRR7556777,SRR7557274,SRR7558379,SRR7564521,SRR7564371,SRR7557384,SRR7565950,SRR7563103,SRR7567650,SRR7565613,SRR7562931,SRR7561611,SRR7565696,SRR7566648,SRR7563096,SRR7566470,SRR7561901

Submission: EBI; 2021-02-02

Accession:: SAMEA7449150
ID:: 17759826

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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