TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7448743; SRA: ERS5206938

Organism: Eubacterium sp. CAG:38
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1936089402_MAG9
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:05Z
ENA-LAST-UPDATE	2020-10-15T10:56:29Z
External Id	SAMEA7448743
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:05Z
INSDC last update	2020-10-15T10:56:29Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1936089402_MAG9
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	99.31
completeness software	CheckM;v1.0.13
contamination score	0.00
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408547,SAMN09409042,SAMN09410353,SAMN09410464,SAMN09410509,SAMN09410682,SAMN09410928,SAMN09411054,SAMN09411243,SAMN09411302,SAMN09411536,SAMN09411690,SAMN09412389,SAMN09412828,SAMN09413144,SAMN09413161,SAMN09413768,SAMN09413851,SAMN09413904,SAMN09414135,SAMN09415106,SAMN09415131,SAMN09415199,SAMN09415597,SAMN09415659,SAMN09415731,SAMN09416055,SAMN09416498,SAMN09416709,SAMN09417118,SAMN09417272,SAMN09417502,SAMN09418481,SAMN09418935,SAMN09419167,SAMN09419272,SAMN09419583,SAMN09419609,SAMN09419667,SAMN09420092,SAMN09420689,SAMN09420991
scientific_name	Eubacterium sp. CAG:38
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1936089402: SRR7567797,SRR7560339,SRR7556845,SRR7557825,SRR7568810,SRR7564365,SRR7564760,SRR7558721,SRR7566038,SRR7559335,SRR7560493,SRR7557598,SRR7559619,SRR7565224,SRR7561855,SRR7565668,SRR7562114,SRR7558551,SRR7557102,SRR7560591,SRR7569233,SRR7563670,SRR7561973,SRR7561031,SRR7558015,SRR7569818,SRR7559631,SRR7557340,SRR7567384,SRR7568717,SRR7558771,SRR7561238,SRR7565215,SRR7559556,SRR7560777,SRR7557167,SRR7557678,SRR7568408,SRR7563234,SRR7557920,SRR7558107,SRR7564898

Submission: EBI; 2021-02-02

Accession:: SAMEA7448743
ID:: 17759419

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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