TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7446262; SRA: ERS5204461

Organism: Eubacterium sp. CAG:38
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1837572164_MAG69
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:07Z
ENA-LAST-UPDATE	2020-10-15T10:20:17Z
External Id	SAMEA7446262
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:07Z
INSDC last update	2020-10-15T10:20:17Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1837572164_MAG69
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	99.33
completeness software	CheckM;v1.0.13
contamination score	0.00
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408067,SAMN09409035,SAMN09413489,SAMN09414153,SAMN09415067,SAMN09415400,SAMN09415819,SAMN09416511,SAMN09417054,SAMN09417977,SAMN09418377,SAMN09418844,SAMN09419479,SAMN09419797,SAMN09420899
scientific_name	Eubacterium sp. CAG:38
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1837572164: SRR7563289,SRR7565309,SRR7558693,SRR7564231,SRR7565982,SRR7564166,SRR7558822,SRR7560064,SRR7556802,SRR7557864,SRR7557088,SRR7569468,SRR7564067,SRR7564100,SRR7565050

Submission: EBI; 2021-02-02

Accession:: SAMEA7446262
ID:: 17757151

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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