TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7444725; SRA: ERS5202926

Organism: Eubacterium sp. CAG:38
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1785317565_MAG50
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:09:59Z
ENA-LAST-UPDATE	2020-10-15T09:55:40Z
External Id	SAMEA7444725
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:09:59Z
INSDC last update	2020-10-15T09:55:40Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1785317565_MAG50
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	98.30
completeness software	CheckM;v1.0.13
contamination score	0.00
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09410183,SAMN09410193,SAMN09410455,SAMN09411267,SAMN09412507,SAMN09413174,SAMN09413707,SAMN09414287,SAMN09414296,SAMN09414296,SAMN09414772,SAMN09416926,SAMN09417533,SAMN09417900,SAMN09419133,SAMN09420425,SAMN09421151
scientific_name	Eubacterium sp. CAG:38
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1785317565: SRR7559845,SRR7560448,SRR7568095,SRR7557354,SRR7563678,SRR7557294,SRR7567362,SRR7562839,SRR7558979,SRR7558980,SRR7560263,SRR7563730,SRR7565294,SRR7567063,SRR7569169,SRR7557291,SRR7565336

Submission: EBI; 2021-02-02

Accession:: SAMEA7444725
ID:: 17755535

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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