TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7444507; SRA: ERS5202708

Organism: Eubacterium sp. AF16-48
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1775724834_MAG48
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:01Z
ENA-LAST-UPDATE	2020-10-15T09:52:43Z
External Id	SAMEA7444507
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:01Z
INSDC last update	2020-10-15T09:52:43Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1775724834_MAG48
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	99.33
completeness software	CheckM;v1.0.13
contamination score	0.67
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408523,SAMN09408976,SAMN09410192,SAMN09410195,SAMN09410315,SAMN09410399,SAMN09410785,SAMN09410785,SAMN09411203,SAMN09411953,SAMN09412366,SAMN09412366,SAMN09412585,SAMN09412719,SAMN09412905,SAMN09413665,SAMN09413684,SAMN09414519,SAMN09414690,SAMN09414953,SAMN09415058,SAMN09415151,SAMN09415633,SAMN09415644,SAMN09415663,SAMN09416052,SAMN09417708,SAMN09417772,SAMN09417936,SAMN09418617,SAMN09418713,SAMN09419217,SAMN09419263,SAMN09419525,SAMN09419532,SAMN09420695,SAMN09420960,SAMN09420960
scientific_name	Eubacterium sp. AF16-48
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1775724834: SRR7567430,SRR7565320,SRR7561634,SRR7558189,SRR7563763,SRR7568922,SRR7558089,SRR7558088,SRR7564131,SRR7560116,SRR7562647,SRR7562646,SRR7567696,SRR7567034,SRR7561703,SRR7562162,SRR7560825,SRR7562319,SRR7560193,SRR7556988,SRR7563113,SRR7563910,SRR7556784,SRR7565758,SRR7568531,SRR7559448,SRR7568155,SRR7557616,SRR7562403,SRR7567335,SRR7567839,SRR7562890,SRR7569731,SRR7559625,SRR7567290,SRR7563192,SRR7557620,SRR7557619

Submission: EBI; 2021-02-02

Accession:: SAMEA7444507
ID:: 17755353

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National Center for Biotechnology Information

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TEDDY OU Gut MAG

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