TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7441760; SRA: ERS5199965

Organism: Clostridiales bacterium 1_7_47FAA
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; unclassified Eubacteriales

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1677598713_MAG60
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:06Z
ENA-LAST-UPDATE	2020-10-15T09:08:58Z
External Id	SAMEA7441760
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:06Z
INSDC last update	2020-10-15T09:08:58Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1677598713_MAG60
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	92.62
completeness software	CheckM;v1.0.13
contamination score	0.63
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408245,SAMN09408359,SAMN09408977,SAMN09409565,SAMN09409813,SAMN09410644,SAMN09410644,SAMN09410644,SAMN09410999,SAMN09411151,SAMN09411231,SAMN09411568,SAMN09411993,SAMN09412041,SAMN09413311,SAMN09414394,SAMN09414807,SAMN09414807,SAMN09414807,SAMN09414807,SAMN09414845,SAMN09415522,SAMN09415929,SAMN09416782,SAMN09416959,SAMN09417749,SAMN09417749,SAMN09417796,SAMN09418220,SAMN09418523,SAMN09418618,SAMN09419129,SAMN09419207,SAMN09420035,SAMN09420035,SAMN09420035,SAMN09420265,SAMN09420801
scientific_name	Clostridiales bacterium 1_7_47FAA
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1677598713: SRR7563326,SRR7561251,SRR7558958,SRR7567267,SRR7563179,SRR7558303,SRR7558302,SRR7558301,SRR7566869,SRR7563467,SRR7558075,SRR7566294,SRR7564339,SRR7559620,SRR7563084,SRR7567783,SRR7565878,SRR7565876,SRR7565875,SRR7565877,SRR7564846,SRR7567459,SRR7557014,SRR7563381,SRR7560198,SRR7566017,SRR7566016,SRR7568603,SRR7564044,SRR7563100,SRR7561498,SRR7561625,SRR7564182,SRR7567549,SRR7567550,SRR7567548,SRR7569594,SRR7563873

Submission: EBI; 2021-02-02

Accession:: SAMEA7441760
ID:: 17752604

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National Center for Biotechnology Information

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