TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7436859; SRA: ERS5195072

Organism: Eubacterium sp. AF16-48
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1477223770_MAG80
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:07Z
ENA-LAST-UPDATE	2020-10-15T07:52:13Z
External Id	SAMEA7436859
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:07Z
INSDC last update	2020-10-15T07:52:13Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1477223770_MAG80
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	96.95
completeness software	CheckM;v1.0.13
contamination score	1.34
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408088,SAMN09408819,SAMN09410012,SAMN09412040,SAMN09412136,SAMN09412869,SAMN09412998,SAMN09413132,SAMN09414610,SAMN09415237,SAMN09416536,SAMN09416814,SAMN09417050,SAMN09417289,SAMN09417804,SAMN09417908,SAMN09418324
scientific_name	Eubacterium sp. AF16-48
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1477223770: SRR7562010,SRR7566388,SRR7561109,SRR7565428,SRR7560617,SRR7561149,SRR7560942,SRR7567263,SRR7557779,SRR7567920,SRR7568757,SRR7565498,SRR7563941,SRR7565534,SRR7563666,SRR7567142,SRR7562325

Submission: EBI; 2021-02-02

Accession:: SAMEA7436859
ID:: 17747201

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

TEDDY OU Gut MAG

Supplemental Content

Related information

Recent activity