TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7436538; SRA: ERS5194752

Organism: Eubacterium sp. AF16-48
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1470258804_MAG25
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:03Z
ENA-LAST-UPDATE	2020-10-15T07:47:07Z
External Id	SAMEA7436538
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:03Z
INSDC last update	2020-10-15T07:47:07Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1470258804_MAG25
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	98.14
completeness software	CheckM;v1.0.13
contamination score	2.01
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09409175,SAMN09409180,SAMN09410033,SAMN09412549,SAMN09412771,SAMN09413039,SAMN09413095,SAMN09413755,SAMN09413841,SAMN09414215,SAMN09414469,SAMN09414752,SAMN09414787,SAMN09414993,SAMN09415023,SAMN09416671,SAMN09416999,SAMN09417217,SAMN09417580,SAMN09417955,SAMN09419414,SAMN09419828,SAMN09420136,SAMN09420550
scientific_name	Eubacterium sp. AF16-48
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1470258804: SRR7563876,SRR7556905,SRR7557020,SRR7569069,SRR7559921,SRR7559121,SRR7569095,SRR7570002,SRR7564123,SRR7564352,SRR7566862,SRR7558386,SRR7561198,SRR7565282,SRR7561909,SRR7558482,SRR7565705,SRR7559511,SRR7562523,SRR7566983,SRR7558937,SRR7557691,SRR7567299,SRR7557652

Submission: EBI; 2021-02-02

Accession:: SAMEA7436538
ID:: 17746881

BioSample

National Center for Biotechnology Information

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