TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7450069; SRA: ERS5208263

Organism: Eubacterium sp. AF16-48
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; unclassified Eubacterium (in: firmicutes)

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1981675801_MAG36
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:00Z
ENA-LAST-UPDATE	2020-10-15T11:17:43Z
External Id	SAMEA7450069
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:00Z
INSDC last update	2020-10-15T11:17:43Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1981675801_MAG36
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	99.33
completeness software	CheckM;v1.0.13
contamination score	0.67
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408855,SAMN09409448,SAMN09409609,SAMN09411322,SAMN09412483,SAMN09413211,SAMN09413688,SAMN09413738,SAMN09413806,SAMN09414441,SAMN09415184,SAMN09415782,SAMN09416662,SAMN09417599,SAMN09420534,SAMN09420635
scientific_name	Eubacterium sp. AF16-48
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1981675801: SRR7566427,SRR7562650,SRR7561358,SRR7560614,SRR7567065,SRR7564366,SRR7569266,SRR7563945,SRR7558878,SRR7566046,SRR7563788,SRR7569334,SRR7561942,SRR7566804,SRR7563265,SRR7559987

Submission: EBI; 2021-02-01

Accession:: SAMEA7450069
ID:: 17731561

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

TEDDY OU Gut MAG

Supplemental Content

Related information

Recent activity