MAG LJ_bin-2050 from assembly ERS4649297

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured delta proteobacterium
cellular organisms; Bacteria; delta/epsilon subdivisions; Deltaproteobacteria; environmental samples

Attributes

collection date	2015-09-15
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	LJ_bin-2050
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:40Z
External Id	SAMEA6956831
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:40Z
INSDC status	public
Submitter Id	LJ_bin-2050
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	94.91
completeness software	checkm
contamination score	2.94
geographic location (latitude)	61.07666666666667
geographic location (longitude)	25.032777777777778
gtdb_taxonomy	d__Bacteria;p__Bdellovibrionota_B;c__UBA2361;o__UBA2361
metagenomic OTU	anoxic_mOTU_3125
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649297
sample owner	Antti Rissanen
scientific_name	uncultured delta proteobacterium
sequencing method	NovaSeq
site name	Lovojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water