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MIMAG Metagenome-assembled Genome sample from Sediminispirochaeta bajacaliforniensis

Identifiers
BioSample: SAMN14918426; Sample name: B5_bin.8; SRA: SRS6658895
Organism
Sediminispirochaeta bajacaliforniensis
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Spirochaetaceae; Sediminispirochaeta
Package
MIMAG: metagenome-assembled genome; version 6.0
Attributes
isolation sourcemarine sediment
collection dateNot applicable
geographic locationNorth Sea: German Bight (Helgoland Mud Area)
latitude and longitude54.052300 N 7.580400 E
relationship to oxygenobligate anaerobe
sample material processingEnrichment was prepared using 5 mL volume from 4th transfer as starting material in a final volume of 50 mL widdel medium. Sample name identifies the unique information of each sample including the target 16S rRNA gene and the phase of the enrichment transfer.
sample size5 mL enrichment was centrifuged down to 1 mL volume which was used for DNA extraction
source material identifiersBenzoate only enrichment at 30ºC after the fifth transfer completely metabolised benzoate . 5mL was collected from the enrichment bottle and stored at -20ºC prior to DNA extraction and metagenome sequencing. Pooled DNA from three replicates of the B5 enrichment used for metagenome sequencing. B5_bin.8 is the reassembled metagenome assembled genome
isolateB5_bin.8
sample typemetagenomic assembly
metagenome sourcemarine sediment metagenome
broad-scale environmental contextmissing
local-scale environmental contextmissing
environmental mediummissing
derived fromThis BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSamples: SAMN14820642, SAMN14820643, and SAMN14820644
metagenomic1
environmental-sample1
Description

Keywords: GSC:MIxS;MIMAG:6.0

BioProject
PRJNA630030 marine sediment metagenome
Retrieve all samples from this project

Submission
University of Bremen, David Aromokeye; 2020-05-14
Accession:
SAMN14918426
ID:
14918426

BioProject Nucleotide

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