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Human gut MAG #6 derived from sample SRS2320657

Identifiers
BioSample: SAMEA5279989; SRA: ERS3087260
Organism
uncultured Anaerostipes sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes; environmental samples
Attributes
collection date2018-01-01
broad-scale environmental contexthuman gut
local-scale environmental contexthuman-associated habitat
environmental mediumfaeces
geographic locationTanzania
investigation typemetagenome-assembled genome
isolation sourcehuman stool
project nameGlobal Human Gut MAGs
sample nameHGM11977
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2019-01-29T17:02:53Z
ENA-LAST-UPDATE2019-01-28T22:52:51Z
External IdSAMEA5279989
INSDC center nameDOE JGI
INSDC first public2019-01-29T17:02:53Z
INSDC last update2019-01-28T22:52:51Z
INSDC statuspublic
Submitter IdHGM11977
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMegaHIT v1.1.1
binning parametersdefault
binning softwareMaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score59.4
completeness softwareCheckM v1.0.7
contamination score7.77
geographic location (latitude)-6.369028
geographic location (longitude)34.888822
metagenomic source408170
sample derived fromSRS883293
scientific_nameuncultured Anaerostipes sp.
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
BioProject
PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Submission
EBI; 2019-02-01
Accession:
SAMEA5279989
ID:
10860543

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