Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Salmonella enterica subsp. enterica serovar Typhi

Organism: Salmonella enterica subsp. enterica serovar Typhi
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica

Attributes

Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
collected by	Aga Khan University, Karachi
collection date	2016-01-06
geographic location	Pakistan
isolate name alias	BS-09
latitude and longitude	missing
strain	CFSAN059649
isolation source	stool
serovar	Typhi
sub species	enterica
host disease	missing
host	Homo sapiens
project name	GenomeTrakr
sequenced by	FDA Center for Food Safety and Applied Nutrition
attribute_package	clinical/host-associated
ontological term	feces:UBERON_0001988
PublicAccession	CFSAN059649
ProjectAccession	PRJNA342326
Species	enterica
Genus	Salmonella

BioProject: PRJNA342326 Citrobacter freundii, Shigella sp., Salmonella enterica, Enterobacter cloacae, Citrobacter sp., and Escherichia coli
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Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
imipenem	susceptible	<	0.5	mg/L	MIC	CLSI
ertapenem	susceptible	<	0.125	mg/L	MIC	CLSI
doripenem	susceptible	<	0.125	mg/L	MIC	CLSI
meropenem	susceptible	<	0.125	mg/L	MIC	CLSI
cefepime	susceptible	<	0.5	mg/L	MIC	CLSI
ciprofloxacin	susceptible	<	0.25	mg/L	MIC	CLSI
ceftriaxone	susceptible	<	1	mg/L	MIC	CLSI
aztreonam	susceptible	<	2	mg/L	MIC	CLSI
trimethoprim-sulfamethoxazole	susceptible	<	0.5/9.5	mg/L	MIC	CLSI
polymyxin B	susceptible	==	0.5	mg/L	MIC	CLSI
colistin	susceptible	==	0.5	mg/L	MIC	EUCAST
tetracycline	susceptible	<	2	mg/L	MIC	CLSI
cefazolin	susceptible	<	1	mg/L	MIC	CLSI
tigecycline	susceptible	<	0.5	mg/L	MIC	EUCAST
cefotaxime	susceptible	<	0.5	mg/L	MIC	CLSI
ceftazidime	susceptible	<	1	mg/L	MIC	CLSI
amikacin	susceptible	<	1	mg/L	MIC	CLSI
gentamicin	susceptible	<	0.25	mg/L	MIC	CLSI
levofloxacin	susceptible	<	0.125	mg/L	MIC	CLSI
tobramycin	susceptible	<	0.5	mg/L	MIC	CLSI
piperacillin-tazobactam	susceptible	<	4/4	mg/L	MIC	CLSI
ampicillin	susceptible	<	1	mg/L	MIC	CLSI
ampicillin-sulbactam	susceptible	<	1/0.5	mg/L	MIC	CLSI
chloramphenicol	susceptible	==	4	mg/L	MIC	CLSI
cefoxitin	susceptible	<	2	mg/L	MIC	CLSI
minocycline	susceptible	<	4	mg/L	MIC	CLSI