Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Shigella flexneri

Organism: Shigella flexneri
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella

Attributes

Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
collected by	Aga Khan University, Karachi
collection date	2015
geographic location	Pakistan
isolate name alias	BL-28504
latitude and longitude	missing
strain	CFSAN059650
isolation source	blood
host disease	missing
host	Homo sapiens
project name	GenomeTrakr
sequenced by	FDA Center for Food Safety and Applied Nutrition
attribute_package	clinical/host-associated
ontological term	blood:UBERON_0000178
PublicAccession	CFSAN059650
ProjectAccession	PRJNA342326
Species	flexneri
Genus	Shigella

BioProject: PRJNA342326 Citrobacter freundii, Shigella sp., Salmonella enterica, Enterobacter cloacae, Citrobacter sp., and Escherichia coli
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Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
imipenem	susceptible	<	0.5	mg/L	MIC	CLSI
ertapenem	susceptible	<	0.125	mg/L	MIC	CLSI
doripenem	susceptible	<	0.125	mg/L	MIC	CLSI
meropenem	susceptible	<	0.125	mg/L	MIC	CLSI
cefepime	susceptible	==	1	mg/L	MIC	CLSI
ciprofloxacin	intermediate	==	2	mg/L	MIC	CLSI
ceftriaxone	resistant	>	32	mg/L	MIC	CLSI
aztreonam	susceptible	==	4	mg/L	MIC	CLSI
trimethoprim-sulfamethoxazole	resistant	>	8/152	mg/L	MIC	CLSI
polymyxin B	susceptible	==	0.5	mg/L	MIC	CLSI
colistin	susceptible	==	0.5	mg/L	MIC	EUCAST
tetracycline	resistant	>	32	mg/L	MIC	CLSI
cefazolin	resistant	>	8	mg/L	MIC	CLSI
tigecycline	susceptible	<	0.5	mg/L	MIC	EUCAST
cefotaxime	resistant	>	64	mg/L	MIC	CLSI
ceftazidime	susceptible	==	2	mg/L	MIC	CLSI
amikacin	susceptible	==	4	mg/L	MIC	CLSI
gentamicin	susceptible	==	1	mg/L	MIC	CLSI
levofloxacin	susceptible	==	2	mg/L	MIC	CLSI
tobramycin	susceptible	==	1	mg/L	MIC	CLSI
piperacillin-tazobactam	susceptible	<	4/4	mg/L	MIC	CLSI
ampicillin	resistant	>	32	mg/L	MIC	CLSI
ampicillin-sulbactam	intermediate	==	16/8	mg/L	MIC	CLSI
chloramphenicol	susceptible	<	2	mg/L	MIC	CLSI
cefoxitin	susceptible	==	4	mg/L	MIC	CLSI
minocycline	susceptible	<	4	mg/L	MIC	CLSI