Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Serratia marcescens

Organism: Serratia marcescens
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia

Attributes

Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
collected by	Aga Khan University, Karachi
collection date	1998
geographic location	Pakistan
isolate name alias	BU-15418
latitude and longitude	missing
strain	CFSAN059609
isolation source	urine
host disease	missing
host	Homo sapiens
project name	GenomeTrakr
sequenced by	FDA Center for Food Safety and Applied Nutrition
attribute_package	clinical/host-associated
ontological term	urine:UBERON_0001088
PublicAccession	CFSAN059609
ProjectAccession	PRJNA342326
Species	marcescens
Genus	Serratia

BioProject: PRJNA342326 Citrobacter freundii, Shigella sp., Salmonella enterica, Enterobacter cloacae, Citrobacter sp., and Escherichia coli
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Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
imipenem	susceptible	<	0.5	mg/L	MIC	CLSI
ertapenem	susceptible	<	0.125	mg/L	MIC	CLSI
doripenem	susceptible	<	0.125	mg/L	MIC	CLSI
meropenem	susceptible	<	0.125	mg/L	MIC	CLSI
cefepime	susceptible	==	1	mg/L	MIC	CLSI
ciprofloxacin	susceptible	<	0.25	mg/L	MIC	CLSI
ceftriaxone	resistant	>	32	mg/L	MIC	CLSI
aztreonam	resistant	>	64	mg/L	MIC	CLSI
trimethoprim-sulfamethoxazole	susceptible	<	0.5/9.5	mg/L	MIC	CLSI
polymyxin B	resistant	>	8	mg/L	MIC	CLSI
colistin	resistant	>	8	mg/L	MIC	EUCAST
tetracycline	resistant	>	32	mg/L	MIC	CLSI
cefazolin	resistant	>	8	mg/L	MIC	CLSI
tigecycline	susceptible	==	1	mg/L	MIC	EUCAST
cefotaxime	resistant	==	64	mg/L	MIC	CLSI
ceftazidime	resistant	==	128	mg/L	MIC	CLSI
amikacin	susceptible	==	16	mg/L	MIC	CLSI
gentamicin	resistant	>	16	mg/L	MIC	CLSI
levofloxacin	susceptible	==	0.25	mg/L	MIC	CLSI
tobramycin	resistant	>	16	mg/L	MIC	CLSI
piperacillin-tazobactam	intermediate	==	32/4	mg/L	MIC	CLSI
ampicillin	resistant	>	32	mg/L	MIC	CLSI
ampicillin-sulbactam	resistant	>	32/16	mg/L	MIC	CLSI
chloramphenicol	intermediate	==	16	mg/L	MIC	CLSI
cefoxitin	resistant	>	16	mg/L	MIC	CLSI
minocycline	resistant	>	16	mg/L	MIC	CLSI