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Organizing biological data

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Select item 10840671.

Soft rot Pectobacteriaceae samples in US 2016-2022

: Project data type: Genome sequencing and assembly

Scope:: Multispecies

Cornell University

Accession:: PRJNA1084067
ID:: 1084067

Select item 9379762.

Transcriptomic response of Dickeya dadantii to topoisomerase I inhibition by seconeolitsine

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB43258
ID:: 937976

Select item 8948493.

Dickeya dadantii strain:XJ12 | isolate:XJ12

Dickeya dadantii strain:XJ12 | isolate:XJ12 Genome sequencing

Taxonomy:: Dickeya dadantii

: Project data type: Genome sequencing

Scope:: Monoisolate

College of Plant Protection, South China Agricultural University

Accession:: PRJNA894849
ID:: 894849

Select item 8244744.

CRISPR SWAPnDROP

: Project data type: Raw sequence reads

Scope:: Multispecies

Philipps University Marburg

Accession:: PRJNA824474
ID:: 824474

Select item 8242825.

pooling of Dickeya dadantii, Escherichia coli and Vibrio natriegens samples for pooled DNA/RNA sequencing

: Project data type: Raw sequence reads

Scope:: Multispecies

Philipps University Marburg

Accession:: PRJNA824282
ID:: 824282

Select item 8219866.

Dickeya dadantii strain:FZ06

Dickeya dadantii strain:FZ06 Genome sequencing

Taxonomy:: Dickeya dadantii

: Project data type: Genome sequencing

Scope:: Monoisolate

South China Agricultural University

Accession:: PRJNA821986
ID:: 821986

Select item 7945597.

Nanopore native RNA-seq for genome-wide identification of transcription units and transcriptional termination sites in the phytopathogen Dickeya dadantii 3937

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB45012
ID:: 794559

Select item 7944568.

Genome-wide identification of transcriptional start sites in the phytopathogen Dickeya dadantii 3937 based on differential RNA-Seq (dRNA-Seq)

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB38359
ID:: 794456

Select item 7721819.

BarSeq quantification of Dickeya transposon mutant fitness in potato stem

: Project data type: Raw sequence reads

Scope:: Multispecies

USDA-ARS

Accession:: PRJNA772181
ID:: 772181

Select item 76834910.

Draft genomes of Pectobacterium sp. and Dickeya sp. isolated in France from fresh water

: Project data type: Genome sequencing and assembly

Scope:: Multispecies

Sorbonne University

Accession:: PRJNA768349
ID:: 768349

Select item 73470211.

Dickeya dadantii strain:S3-1

Dickeya dadantii subsp. dieffenbachiae strain S3-1 Genome sequencing

Taxonomy:: Dickeya dadantii

: Project data type: Genome sequencing

Scope:: Monoisolate

Fu Jen Catholic University

Accession:: PRJNA734702
ID:: 734702

Select item 70232712.

Transcriptomic response of Dickeya dadantii ihfA mutant to DNA relaxation by novobiocin

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB38153
ID:: 702327

Select item 69247713.

TnSeq mapping and BarSeq quantification of Dickeya mutant fitness

: Project data type: Raw sequence reads

Scope:: Multispecies

USDA-ARS

Accession:: PRJNA692477
ID:: 692477

Select item 64573114.

Dickeya dadantii

Dickeya dadantii Raw sequence reads

Taxonomy:: Dickeya dadantii

: Project data type: Raw sequence reads

Scope:: Monoisolate

Institute of Bast Fiber Crops, Chinese Academy of Agriculture Sciences

Accession:: PRJNA645731
ID:: 645731

Select item 64572815.

Dickeya dadantii

Dickeya dadantii Genome sequencing

Taxonomy:: Dickeya dadantii

: Project data type: Raw sequence reads

Scope:: Monoisolate

Institute of Bast Fiber Crops, Chinese Academy of Agriculture Sciences

Accession:: PRJNA645728
ID:: 645728

Select item 62988116.

Dickeya dadantii

Dickeya dadantii Genome sequencing and assembly

Taxonomy:: Dickeya dadantii

: Project data type: Genome sequencing and assembly

Scope:: Multiisolate

National Agriculture and Food Research Organization (NARO)

Accession:: PRJNA629881
ID:: 629881

Select item 53326817.

Transcriptomic response of Dickeya dadantii to DNA relaxation by novobiocin

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB31087
ID:: 533268

Select item 52498618.

Dickeya dadantii strain:Kunimi-3

Dickeya dadantii strain:Kunimi-3 Genome sequencing and assembly

Taxonomy:: Dickeya dadantii

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

National Agriculture and Food Research Organization (NARO)

Accession:: PRJNA524986
ID:: 524986

Select item 52141819.

HAI2-naive strains of Pectobacterium from New Zealand

: Project data type: Genome sequencing and assembly

Scope:: Multispecies

The New Zealand Institute for Plant and Food Research Ltd.

Accession:: PRJNA521418
ID:: 521418

Select item 49007320.

Dickeya dadantii 3937

Dickeya dadantii small RNA sequencing

Taxonomy:: Dickeya dadantii 3937

: Project data type: Raw sequence reads

Scope:: Monoisolate

None

Accession:: PRJNA490073
ID:: 490073

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