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BioProject

Organizing biological data

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Select item 11516921.

Transcriptomic response of Escherichia coli O157:H7 on Romaine lettuce during the pre-processing interval

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Maryland, College Park

Accession:: PRJNA1151692
ID:: 1151692

Select item 9894052.

Escherichia coli O157:H7 str. EDL933

Escherichia coli O157:H7 str. EDL933 Genome sequencing and assembly

Taxonomy:: Escherichia coli O157:H7 str. EDL933

: Project data type: Genome sequencing and assembly

Scope:: Multiisolate

Nanjing Agricultural University

Accession:: PRJNA989405
ID:: 989405

Select item 9719073.

Escherichia coli O157:H7 str. EDL933

Escherichia coli O157:H7 EDL933 Raw sequence reads

Taxonomy:: Escherichia coli O157:H7 str. EDL933

: Project data type: Raw sequence reads

Scope:: Multiisolate

Nankai University

Accession:: PRJNA971907
ID:: 971907

Select item 9266524.

Escherichia coli O157:H7 str. EDL933

Transcriptome biological duplicates of Escherichia coli O157:H7 str. EDL933 infected with red blood cells

Taxonomy:: Escherichia coli O157:H7 str. EDL933

: Project data type: Transcriptome or Gene expression

Scope:: Other

Seoul National University

Accession:: PRJNA926652
ID:: 926652

Select item 8941875.

Tn-seq data: Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses

: Project data type: Raw sequence reads

Scope:: Multispecies

University of British Columbia

Accession:: PRJNA894187
ID:: 894187

Select item 8941836.

Transcriptomic data: Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses

: Project data type: Raw sequence reads

Scope:: Multispecies

University of British Columbia

Accession:: PRJNA894183
ID:: 894183

Select item 8843957.

Phenotypic profiling to predict virulence in E. coli O157:H7

: Project data type: Genome sequencing

Scope:: Multispecies

USDA-ARS

Accession:: PRJNA884395
ID:: 884395

Select item 8391658.

Global transcriptional regulation of riboflavin in EHEC O57:H7

: Project data type: Raw sequence reads

Scope:: Multispecies

Nankai University

Accession:: PRJNA839165
ID:: 839165

Select item 7975179.

enteropathogenic Escherichia coli

: Project data type: Raw sequence reads

Scope:: Multispecies

Nankai University

Accession:: PRJNA797517
ID:: 797517

Select item 77747210.

Adaptive radioresistance of Enterohemorrhagic Escherichia coli O157:H7

: Project data type: Raw sequence reads

Scope:: Multispecies

Universite Laval

Accession:: PRJNA777472
ID:: 777472

Select item 75332411.

A chromatin immunoprecipitation database for prokarytic organisms [fur]

: Project data type: Epigenomics

Scope:: Multispecies

UCSD

Accession:: PRJNA753324
ID:: 753324

Select item 69978812.

Establishing the global binding profile of DsdC in UPEC and NMEC

UPEC and NMEC strains expressing chromosomally FLAG-tagged DsdC were cultured in minimal medium for 3 h, spiked with D-serine for 2 h or left untreated, before harvesting for ChIP-seq

: Project data type: Other

Scope:: Monoisolate

Glasgow Polyomics

Accession:: PRJEB36549
ID:: 699788

Select item 69978713.

Establishing the global regulatory role of DsdC in UPEC and NMEC

UPEC and NMEC wild type and ΔdsdC mutants were cultured in minimal medium for 3 h, spiked with D-serine for 2 h, before harvesting for RNA-seq. DsdA was expressed to overcome growth inhibitory effects of D-serine. EHEC was also included for comparison.

: Project data type: Other

Scope:: Monoisolate

Glasgow Polyomics

Accession:: PRJEB36547
ID:: 699787

Select item 68157114.

Genetic analysis of the role of the conserved inner membrane protein CvpA in EHEC resistance to deoxycholate

Taxonomy:: Escherichia coli O157:H7 str. EDL933

: Project data type: Other

Scope:: Multiisolate

Waldor Lab, Microbiology, Harvard Medical School

Accession:: PRJNA681571
ID:: 681571

Select item 66752315.

STEC attached to colonic explants sequencing

: Project data type: Raw sequence reads

Scope:: Multispecies

Los Alamos National Laboratory

Accession:: PRJNA667523
ID:: 667523

Select item 65543816.

Transcriptional profile of D-serine tolerant EHEC mutants

EHEC TUV93-0 wild type and D-serine tolerant mutants were cultured in minimal medium with/without D-serine for 4 h 30 min, before harvesting for RNA-seq