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Organizing biological data
Providencia alcalifaciens
Metabolites limiting predator growth wane with biodiversity
Providencia alcalifaciens 205/92
Providencia alcalifaciens 205/92 Genome sequencing
Role of Flies in the Dissemination of Carbapenem-Resistant Enterobacteriaceae (CRE): An Epidemiological and Genomic Study in China
Transmission and hedge balance of virus-encoded cholera toxin genes in global habitats
mcr isolates
EMG produced TPA metagenomics assembly of PRJEB52748 data set (Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides).
CDC International HAI/AR-Seq: Antibiotic Resistance in Communities and Hospitals (ARCH)
bacteria
SC PHL pathogens isolated from wastewater samples that are not routine GenomeTrakr enteric or ESKAPE organisms.
Providencia alcalifaciens strain:2939/90 | isolate:2939/90
Providencia alcalifaciens strain:2939/90 | isolate:2939/90 Genome sequencing
EMG produced TPA metagenomics assembly of PRJNA599289 data set (Gut microbiome of honey bees in china).
Providencia alcalifaciens strain:BIGb0506
Providencia alcalifaciens BIGb0506 genome sequencing
Providencia alcalifaciens Nanopore sequence data from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs.
Providencia alcalifaciens Nanopore sequence data
Providencia alcalifaciens hybrid assemblies from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs.
Hybrid genome assemblies of Providencia alcalifaciens isolates
Providencia alcalifaciens MiSeq Illumina sequence data from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs.
Providencia alcalifaciens Illumina sequence data
tet(X) positive strains isolated from chicken farm Genome sequencing and assembly
Mouse Oral Microbial Genomes
Providencia alcalifaciens strain:1701003
Providencia alcalifaciens strain:1701003 Genome sequencing
MOT database genomes - II
Surveillance and risk assessment of soil pathogens
There exist many environmental reservoirs of pathogens in the world around us. Many of these pathogens are facultative or ‘opportunistic’, meaning they can also survive outside of a host for long periods of time. While many of these reservoirs have been extensively studied, one which has received less attention is soil. To identify potentially dangerous soil pathogens and determine the threat they pose we have undertaken several experiments using samples collected from around Cornwall, England. Soil samples were screened for pathogenic potential using the Galleria mellonella model system. Isolates were obtained from any samples with >50% mortality and tested individually. Isolates causing >50% mortality were selected for further study; mortality rates were obtained, and species were identified using 16s sequencing. 2 main genera of bacteria were found to be responsible for most pathogenic infections: Serratia and Providencia. We used qPCR to determine the proportion of these in our environmental samples, undertook antibiotic-resistance profiling, and sent each distinct strain for full-genome sequencing (results pending). Our results show that the majority of soil samples taken cause >50% mortality, and could pose a threat to human health. We intend to quantify the risks posed, and also to examine whether non-virulent strains could evolve to become pathogenic in vivo.
Providencia_TEDA
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