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Organizing biological data
HoloFood Salmon Gut MAG catalogue
HoloFood Chicken Caecum MAG catalogue
HoloFood Chicken Caecum Metatranscriptome
HoloFood Chicken Host Transcriptome
HoloFood Salmon Trial C Gut Metagenome
HoloFood Chicken Caecum+Ileum Metagenome – non-targeted metabolomics batch
HoloFood Chicken Ileum Metagenome – deeply sequenced batch
HoloFood Chicken Caecum Metagenome – extreme sizes batch
HoloFood Salmon Host Genome
HoloFood Chicken Host Genome
HoloFood Salmon Trial A+B Gut Metatranscriptome
HoloFood Chicken Caecum Metagenome – deeply sequenced batch
HoloFood Salmon Trial A+B Gut Metagenome
HoloFood Chicken Caecum+Ileum Metagenome
EMG produced TPA metagenomics assembly of PRJEB22062 data set (As part of the EFFORT project, we sampled feces from pig and poultry livestock in nine European countries (BE, BG, DK, FR, ES, GE, NL, PL, SP). More than 9000 animals were sampled, across 181 pig and 178 poultry herds to generate herd-level composite fecal samples. Using shotgun metagenomics, we have quantified and characterized the antimicrobial resistance gene pools (resistomes) in Europe’s two most intensively raised livestock species.).
EMG produced TPA metagenomics assembly of PRJNA193217 data set (Chicken cecal contents Metagenome).
EMG produced TPA metagenomics assembly of PRJEB14491 data set (metagenomic Shotgun analysis of cecum microbiome of poultry).
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