Escherichia coli (ID 601484) - BioProject

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Accession: PRJNA601484 ID: 601484

Escherichia coli

Escherichia coli and Shiga toxin-producing E. coli isolated in feces of Canadian feedlot cattle

See Genome Information for Escherichia coli

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The goals of this study are to evaluate the virulence, resistance and adhesion profile of strains isolated from feces of beef cattle in Alberta, Canada. Escherichia coli and Shiga toxin-producing E. coli isolated in feces of Canadian feedlot cattle

Accession	PRJNA601484
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Stanford K et al., "Influence of Season and Feedlot Location on Prevalence and Virulence Factors of Seven Serogroups of Escherichia coli in Feces of Western-Canadian Slaughter Cattle.", PLoS One, 2016;11(8):e0159866 Stanford K et al., "Monitoring Escherichia coli O157:H7 in inoculated and naturally colonized feedlot cattle and their environment.", J Food Prot, 2005 Jan;68(1):26-33
Grants	"Sandwich Doctorate" (Grant ID E-26/201.859/2019, Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro) "Visiting Professor" (Grant ID PVEX-88881.169965/2018-01, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior) "Canada-Alberta Partnership" (Grant ID 2019A002AF, Alberta Agriculture and Forestry)
Submission	Registration date: 26-Feb-2020 LETHBRIDGE RESEARCH CENTRE
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	48
SRA Experiments	48
Publications
PubMed	2
PMC	1
Other datasets
BioSample	48
Assembly	48

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

25
23
48

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_011029355.1	JAAKDD000000000	SAMN13870004	CAP01	Escherichia coli
GCA_011029325.1	JAAKDC000000000	SAMN13870005	CAP02	Escherichia coli
GCA_011029335.1	JAAKDB000000000	SAMN13870006	CAP03	Escherichia coli
GCA_011029285.1	JAAKDA000000000	SAMN13870007	CAP04	Escherichia coli
GCA_011029245.1	JAAKCZ000000000	SAMN13870008	CAP05	Escherichia coli
GCA_011032695.1	JAAKCY000000000	SAMN13870009	CAP06	Escherichia coli
GCA_011032685.1	JAAKCX000000000	SAMN13870010	CAP08	Escherichia coli
GCA_011032655.1	JAAKCW000000000	SAMN13870011	CAP09	Escherichia coli
GCA_011032645.1	JAAKCV000000000	SAMN13870012	CAP10	Escherichia coli
GCA_011032625.1	JAAKCU000000000	SAMN13870013	CAP11	Escherichia coli
GCA_011032595.1	JAAKCS000000000	SAMN13870015	CAP13	Escherichia coli
GCA_011032585.1	JAAKCR000000000	SAMN13870016	CAP14	Escherichia coli
GCA_011032535.1	JAAKCP000000000	SAMN13870018	CAP16	Escherichia coli
GCA_011032545.1	JAAKCT000000000	SAMN13870014	CAP12	Escherichia coli
GCA_011032525.1	JAAKCQ000000000	SAMN13870017	CAP15	Escherichia coli
GCA_011032485.1	JAAKCM000000000	SAMN13870021	CAP19	Escherichia coli
GCA_011032475.1	JAAKCN000000000	SAMN13870020	CAP18	Escherichia coli
GCA_011032445.1	JAAKCO000000000	SAMN13870019	CAP17	Escherichia coli
GCA_011032425.1	JAAKCL000000000	SAMN13870022	CAP20	Escherichia coli
GCA_011032435.1	JAAKCK000000000	SAMN13870023	CAP21	Escherichia coli
GCA_011032365.1	JAAKCH000000000	SAMN13870026	CAP24	Escherichia coli
GCA_011032355.1	JAAKCJ000000000	SAMN13870024	CAP22	Escherichia coli
GCA_011032345.1	JAAKCI000000000	SAMN13870025	CAP23	Escherichia coli
GCA_011032325.1	JAAKCG000000000	SAMN13870027	CAP25	Escherichia coli
GCA_011032335.1	JAAKCF000000000	SAMN13870028	CAP26	Escherichia coli
GCA_011032285.1	JAAKCE000000000	SAMN13870029	CAP27	Escherichia coli
GCA_011032275.1	JAAKCC000000000	SAMN13870031	CAP29	Escherichia coli
GCA_011032265.1	JAAKCD000000000	SAMN13870030	CAP28	Escherichia coli
GCA_011032225.1	JAAKCA000000000	SAMN13870033	CAP31	Escherichia coli
GCA_011032235.1	JAAKCB000000000	SAMN13870032	CAP30	Escherichia coli
GCA_011032195.1	JAAKBY000000000	SAMN13870035	CAP33	Escherichia coli
GCA_011032185.1	JAAKBZ000000000	SAMN13870034	CAP32	Escherichia coli
GCA_011032165.1	JAAKBX000000000	SAMN13870036	CAP34	Escherichia coli
GCA_011032135.1	JAAKBW000000000	SAMN13870037	CAP35	Escherichia coli
GCA_011032125.1	JAAKBV000000000	SAMN13870038	CAP36	Escherichia coli
GCA_011032095.1	JAAKBS000000000	SAMN13870041	CAP39	Escherichia coli
GCA_011032075.1	JAAKBR000000000	SAMN13870042	CAP40	Escherichia coli
GCA_011032055.1	JAAKBU000000000	SAMN13870039	CAP37	Escherichia coli
GCA_011032045.1	JAAKBT000000000	SAMN13870040	CAP38	Escherichia coli
GCA_011032025.1	JAAKBQ000000000	SAMN13870043	CAP41	Escherichia coli
GCA_011028145.1	JAAKBO000000000	SAMN13870045	CAP43	Escherichia coli
GCA_011028135.1	JAAKBP000000000	SAMN13870044	CAP42	Escherichia coli
GCA_011028125.1	JAAKBN000000000	SAMN13870046	CAP44	Escherichia coli
GCA_011028105.1	JAAKBM000000000	SAMN13870047	CAP45	Escherichia coli
GCA_011028085.1	JAAKBL000000000	SAMN13870048	CAP46	Escherichia coli
GCA_011028055.1	JAAKBK000000000	SAMN13870049	CAP47	Escherichia coli
GCA_011028045.1	JAAKBI000000000	SAMN13870051	CAP49	Escherichia coli
GCA_011028025.1	JAAKBJ000000000	SAMN13870050	CAP48	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	20
Data volume, Mbytes	12388

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Escherichia coli

Escherichia coli and Shiga toxin-producing E. coli isolated in feces of Canadian feedlot cattle

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