Whole Genome Sequencing of Salmonella enterica sub... (ID 413152) - BioProject

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Accession: PRJEB7560 ID: 413152

Whole Genome Sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:– isolates (PFGE genotype STYMXB.0131) associated to a human outbreak in Northern Italy.

Illumina Miseq genome sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:– isolates associated to a food toxinfection occurred in Piacenza, Northen Italy in 2013.

See Genome Information for Salmonella enterica

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3969 additional projects are related by organism.

From July to November 2013 more than one hundred human cases of salmonellosis by Salmonella Typhimurium Monophasic variant were diagnosed in Piacenza and linked to pork-meat consumption. More...

Accession	PRJEB7560
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Salmonella enterica subsp. enterica serovar Typhimurium[Taxonomy ID: 90371] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica serovar Typhimurium
Submission	Registration date: 6-Oct-2017 Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	19005
WGS master	80
SRA Experiments	98
Other datasets
BioSample	98
Assembly	80

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

80
80

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_900002805.1	CDKM00000000	SAMEA2822455	STM111	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003245.1	CDKJ00000000	SAMEA2822442	STM121	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900019235.1	CDIL00000000	SAMEA2822423	STM20	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002655.1	CDJL00000000	SAMEA2822417	STM16	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003275.1	CDLA00000000	SAMEA2822454	STM147	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900009535.1	CDHR00000000	SAMEA2822420	STM3	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002645.1	CDHQ00000000	SAMEA2822416	STM15	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900005365.1	CDIG00000000	SAMEA3139668	STM4	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002635.1	CDKV00000000	SAMEA3139669	STM6	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900006165.1	CDKX00000000	SAMEA2822459	STM116	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003355.1	CDKR00000000	SAMEA2822468	STM188	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003345.1	CDKH00000000	SAMEA2822458	STM120	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003285.1	CDJW00000000	SAMEA2822485	STM206	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003325.1	CDJV00000000	SAMEA2822490	STM211	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003335.1	CDKL00000000	SAMEA2822445	STM110	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007195.1	CWKK00000000	SAMEA3481712	STM217	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900006185.1	CWLZ00000000	SAMEA3481711	STM216	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007275.1	CWKJ00000000	SAMEA3481713	STM218	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003975.1	CDKZ00000000	SAMEA2822418	STM2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003755.1	CDKY00000000	SAMEA2822425	STM21	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003365.1	CDKP00000000	SAMEA2822471	STM192	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003265.1	CDKQ00000000	SAMEA2822414	STM13	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003315.1	CDKS00000000	SAMEA2822435	STM86	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003305.1	CDJK00000000	SAMEA3139672	STM9	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003295.1	CDKT00000000	SAMEA3139671	STM8	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003215.1	CDJI00000000	SAMEA2822491	STM214	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003115.1	CDJY00000000	SAMEA2822489	STM212	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003225.1	CDKB00000000	SAMEA3139674	STM11	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003195.1	CDKC00000000	SAMEA2822478	STM22	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003205.1	CDJT00000000	SAMEA2822483	STM204	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003105.1	CDJU00000000	SAMEA2822484	STM207	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003095.1	CDKF00000000	SAMEA2822475	STM177	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003175.1	CDIS00000000	SAMEA2822448	STM142	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003165.1	CDIO00000000	SAMEA2822439	STM87	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003045.1	CDJA00000000	SAMEA2822464	STM160	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003055.1	CDJB00000000	SAMEA2822467	STM184	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003085.1	CDIY00000000	SAMEA2822461	STM122	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003035.1	CDIX00000000	SAMEA2822460	STM109	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003075.1	CDJP00000000	SAMEA2822438	STM75	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003185.1	CDIT00000000	SAMEA2822453	STM133	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003025.1	CDKA00000000	SAMEA2822443	STM126	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007445.1	CDIN00000000	SAMEA2822434	STM57	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003065.1	CDJN00000000	SAMEA2822430	STM31	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900006005.1	CDLC00000000	SAMEA2822428	STM28	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003145.1	CDII00000000	SAMEA2822424	STM40	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003135.1	CDIH00000000	SAMEA3139673	STM12	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003155.1	CDKI00000000	SAMEA2822415	STM14	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002975.1	CDID00000000	SAMEA2822486	STM208	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003125.1	CDIF00000000	SAMEA3139670	STM7	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900016625.1	CDIC00000000	SAMEA2822487	STM213	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002965.1	CDKD00000000	SAMEA2822481	STM205	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003015.1	CDIB00000000	SAMEA2822479	STM201	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002955.1	CDJF00000000	SAMEA2822482	STM203	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002915.1	CDJD00000000	SAMEA2822480	STM202	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900005965.1	CDHZ00000000	SAMEA2822474	STM46	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007435.1	CDJC00000000	SAMEA2822477	STM200	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900003005.1	CDJE00000000	SAMEA2822476	STM199	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002905.1	CDJR00000000	SAMEA2822466	STM194	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007425.1	CDKU00000000	SAMEA2822462	STM169	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002925.1	CDIW00000000	SAMEA2822463	STM157	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007395.1	CDIU00000000	SAMEA2822452	STM135	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002795.1	CDIQ00000000	SAMEA2822447	STM141	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002815.1	CDIV00000000	SAMEA2822456	STM113	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002985.1	CDIZ00000000	SAMEA2822465	STM172	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002785.1	CDKO00000000	SAMEA2822451	STM134	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002775.1	CDIR00000000	SAMEA2822450	STM156	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002755.1	CDHX00000000	SAMEA2822444	STM118	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002735.1	CDJQ00000000	SAMEA2822441	STM19	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002745.1	CDIP00000000	SAMEA2822446	STM139	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002765.1	CDHY00000000	SAMEA2822449	STM143	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002715.1	CDHW00000000	SAMEA2822432	STM44	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002725.1	CDJO00000000	SAMEA2822436	STM69	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002695.1	CDHV00000000	SAMEA2822433	STM45	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002705.1	CDHU00000000	SAMEA2822437	STM70	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002685.1	CDIM00000000	SAMEA2822431	STM33	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002675.1	CDHT00000000	SAMEA2822429	STM29	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900002665.1	CDJM00000000	SAMEA2822427	STM25	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900015205.1	CDIJ00000000	SAMEA2822422	STM18	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900005975.1	CDHS00000000	SAMEA2822426	STM23	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_900007385.1	CDIK00000000	SAMEA2822419	STM1	Salmonella enterica subsp. enterica serovar Typhimurium

SRA Data Details

Parameter	Value
Data volume, Gbases	60
Data volume, Mbytes	37314

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Whole Genome Sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:– isolates (PFGE genotype STYMXB.0131) associated to a human outbreak in Northern Italy.

Illumina Miseq genome sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:– isolates associated to a food toxinfection occurred in Piacenza, Northen Italy in 2013.

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