human gut metagenome (ID 397219) - BioProject

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Accession: PRJNA397219 ID: 397219

human gut metagenome

Gut metagenomes of patients with colorectal cancer

We sequenced the gut metagenomes of patients with colorectal cancer, together age- and sex-matched controls. More...

Accession	PRJNA397219
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Hale VL et al., "Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.", Methods, 2018 Oct 1;149:59-68
Grants	"Microbial Metabolic Toxicity Drives Colon Cancer" (Grant ID R01 CA179243, National Cancer Institute)
Submission	Registration date: 23-May-2018 Mayo Clinic
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6208
WGS master	85
SRA Experiments	88
Protein Sequences	160244
Publications
PubMed	1
PMC	1
Other datasets
BioSample	107
Assembly	85

Genome assemblies, organelles and plasmids:

Assembly GCA_003149735.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANA00000000

Assembly GCA_003149765.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMZ00000000

Assembly GCA_003149785.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANF00000000

Assembly GCA_003149835.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMX00000000

Assembly GCA_003149855.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMV00000000

Assembly GCA_003149875.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMO00000000

Assembly GCA_003149895.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMN00000000

Assembly GCA_003149915.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMK00000000

Assembly GCA_003149935.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMH00000000

Assembly GCA_003149955.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAME00000000

Assembly GCA_003149965.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMF00000000

Assembly GCA_003149995.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMB00000000

Assembly GCA_003150015.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALV00000000

Assembly GCA_003150035.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALR00000000

Assembly GCA_003150055.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALQ00000000

Assembly GCA_003150065.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALP00000000

Assembly GCA_003150075.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALD00000000

Assembly GCA_003150115.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALC00000000

Assembly GCA_003150135.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKX00000000

Assembly GCA_003150145.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANG00000000

Assembly GCA_003150175.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKZ00000000

Assembly GCA_003150195.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANE00000000

Assembly GCA_003150215.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANB00000000

Assembly GCA_003150225.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAND00000000

Assembly GCA_003150235.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMW00000000

Assembly GCA_003150275.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMY00000000

Assembly GCA_003150295.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMU00000000

Assembly GCA_003150305.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMR00000000

Assembly GCA_003150315.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAML00000000

Assembly GCA_003150355.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMJ00000000

Assembly GCA_003150375.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMG00000000

Assembly GCA_003150395.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMI00000000

Assembly GCA_003150405.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMM00000000

Assembly GCA_003150435.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMC00000000

Assembly GCA_003150445.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMA00000000

Assembly GCA_003150475.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALY00000000

Assembly GCA_003150485.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALX00000000

Assembly GCA_003150515.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALW00000000

Assembly GCA_003150545.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALU00000000

Assembly GCA_003150565.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALT00000000

Assembly GCA_003150575.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALS00000000

Assembly GCA_003150605.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALO00000000

Assembly GCA_003150615.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALN00000000

Assembly GCA_003150645.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALM00000000

Assembly GCA_003150735.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMQ00000000

Assembly GCA_003150745.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QANC00000000

Assembly GCA_003150755.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMT00000000

Assembly GCA_003150875.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMP00000000

Assembly GCA_003150885.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMD00000000

Assembly GCA_003150895.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALZ00000000

Assembly GCA_003150955.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALJ00000000

Assembly GCA_003150975.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALF00000000

Assembly GCA_003150995.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALE00000000

Assembly GCA_003151015.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKA00000000

Assembly GCA_003173675.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAMS00000000

Assembly GCA_003343445.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALL00000000

Assembly GCA_003343465.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALH00000000

Assembly GCA_003343475.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALI00000000

Assembly GCA_003343495.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALK00000000

Assembly GCA_003343525.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALG00000000

Assembly GCA_003343545.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALB00000000

Assembly GCA_003343565.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QALA00000000

Assembly GCA_003343585.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKY00000000

Assembly GCA_003343605.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKW00000000

Assembly GCA_003343625.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKV00000000

Assembly GCA_003343635.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKU00000000

Assembly GCA_003343645.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKT00000000

Assembly GCA_003343685.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKS00000000

Assembly GCA_003343705.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKR00000000

Assembly GCA_003343725.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKQ00000000

Assembly GCA_003343735.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKP00000000

Assembly GCA_003343765.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKO00000000

Assembly GCA_003343785.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKN00000000

Assembly GCA_003343805.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKM00000000

Assembly GCA_003343815.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKL00000000

Assembly GCA_003343845.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKK00000000

Assembly GCA_003343865.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKJ00000000

Assembly GCA_003343885.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKH00000000

Assembly GCA_003343905.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKI00000000

Assembly GCA_003343915.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKG00000000

Assembly GCA_003343945.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKF00000000

Assembly GCA_003343965.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKD00000000

Assembly GCA_003343975.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKC00000000

Assembly GCA_003343995.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKE00000000

Assembly GCA_003344025.1 :

Name	GenBank
Whole Genome Shotgun Assembly	QAKB00000000

SRA Data Details

Parameter	Value
Data volume, Gbases	2,257
Data volume, Tbytes	1.42

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human gut metagenome

Gut metagenomes of patients with colorectal cancer

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