PulseNet tracked organisms (ID 590944) - BioProject

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Accession: PRJNA590944 ID: 590944

PulseNet tracked organisms

Escherichia, Shigella, Salmonella, Listeria, Campylobacter, Vibrio Raw sequence reads

Sequences associated with validation of sequencing reagents and platforms

Accession	PRJNA590944
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 21-Nov-2019 PulseNet USA - CDC
Relevance	Technical and biological replicates of the same strain

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	70
SRA Experiments	1627
Other datasets
BioSample	341
Assembly	70

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

10
60
70

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_014527485.1	JABXLA000000000	SAMN13941775	2012L-5520	Listeria innocua
GCA_014527455.1	JABXLB000000000	SAMN13941776	ATCC 33091	Listeria innocua
GCA_014527445.1	JABXLF000000000	SAMN13941780	F6216	Listeria innocua
GCA_014527425.1	JABXLC000000000	SAMN13941777	F4078	Listeria innocua
GCA_014527395.1	JABXLE000000000	SAMN13941779	F6215	Listeria innocua
GCA_014527385.1	JABXLD000000000	SAMN13941778	F6213	Listeria innocua
GCA_014527345.1	JABXLH000000000	SAMN13941782	H3290	Listeria innocua
GCA_014527355.1	JABXLG000000000	SAMN13941781	G2383	Listeria innocua
GCA_014527315.1	JABXLI000000000	SAMN13941783	F5999	Listeria ivanovii
GCA_014527285.1	JABXLJ000000000	SAMN13941784	H3291	Listeria ivanovii
GCA_014527265.1	JABXLL000000000	SAMN13941786	2012L-5526	Listeria marthii
GCA_014527305.1	JABXLK000000000	SAMN13941785	2012L-5525	Listeria marthii
GCA_014529455.1	JABXLQ000000000	SAMN13941791	2013L-5712	Listeria monocytogenes
GCA_014527245.1	JABXLM000000000	SAMN13941787	2013L-5275	Listeria monocytogenes
GCA_014527205.1	JABXLN000000000	SAMN13941788	2013L-5347	Listeria monocytogenes
GCA_014527195.1	JABXLO000000000	SAMN13941789	2013L-5504	Listeria monocytogenes
GCA_014527175.1	JABXLP000000000	SAMN13941790	2013L-5562	Listeria monocytogenes
GCA_014527165.1	JABXLR000000000	SAMN13941792	2014L-6025	Listeria monocytogenes
GCA_014527145.1	JABXLS000000000	SAMN13941793	2014L-6438	Listeria monocytogenes
GCA_014527125.1	JABXLT000000000	SAMN13941794	2014L-6447	Listeria monocytogenes
GCA_014527095.1	JABXLU000000000	SAMN13941795	2014L-6459	Listeria monocytogenes
GCA_014527085.1	JABXLV000000000	SAMN13941796	F2365	Listeria monocytogenes
GCA_014527055.1	JABXLW000000000	SAMN13941797	F4233	Listeria monocytogenes
GCA_014527045.1	JABXLX000000000	SAMN13941798	F4554	Listeria monocytogenes
GCA_014527025.1	JABXLY000000000	SAMN13941799	G4599	Listeria monocytogenes
GCA_014526995.1	JABXMB000000000	SAMN13941802	2010L-1846	Listeria monocytogenes
GCA_014526985.1	JABXLZ000000000	SAMN13941800	J0096	Listeria monocytogenes
GCA_014526945.1	JABXMA000000000	SAMN13941801	2009L-1023	Listeria monocytogenes
GCA_014526935.1	JABXMD000000000	SAMN13941804	2011L-2626	Listeria monocytogenes
GCA_014526925.1	JABXMC000000000	SAMN13941803	2010L-1878	Listeria monocytogenes
GCA_014526905.1	JABXMF000000000	SAMN13941806	2013L-5057	Listeria monocytogenes
GCA_014526845.1	JABXMH000000000	SAMN13941808	2013L-5409	Listeria monocytogenes
GCA_014526855.1	JABXME000000000	SAMN13941805	2012L-5240	Listeria monocytogenes
GCA_014526825.1	JABXMG000000000	SAMN13941807	2013L-5369	Listeria monocytogenes
GCA_014526835.1	JABXMI000000000	SAMN13941809	2014L-6061	Listeria monocytogenes
GCA_014526795.1	JABXMJ000000000	SAMN13941810	2011L-2443	Listeria monocytogenes
GCA_014526785.1	JABXMK000000000	SAMN13941811	2013L-5061	Listeria monocytogenes
GCA_014526735.1	JABXMM000000000	SAMN13941813	2013L-5397	Listeria monocytogenes
GCA_014526725.1	JABXML000000000	SAMN13941812	2013L-5130	Listeria monocytogenes
GCA_014526745.1	JABXMN000000000	SAMN13941814	2013L-5400	Listeria monocytogenes
GCA_014526645.1	JABXMR000000000	SAMN13941818	2013L-5616	Listeria monocytogenes
GCA_014526695.1	JABXMP000000000	SAMN13941816	2013L-5455	Listeria monocytogenes
GCA_014526665.1	JABXMO000000000	SAMN13941815	2013L-5443	Listeria monocytogenes
GCA_014526655.1	JABXMQ000000000	SAMN13941817	2013L-5513	Listeria monocytogenes
GCA_014526615.1	JABXMT000000000	SAMN13941820	2013L-5759	Listeria monocytogenes
GCA_014526585.1	JABXMS000000000	SAMN13941819	2013L-5620	Listeria monocytogenes
GCA_014526575.1	JABXMV000000000	SAMN13941822	2014L-6160	Listeria monocytogenes
GCA_014526555.1	JABXMU000000000	SAMN13941821	2014L-6130	Listeria monocytogenes
GCA_014526535.1	JABXMW000000000	SAMN13941823	2014L-6253	Listeria monocytogenes
GCA_014526505.1	JABXMX000000000	SAMN13941824	2014L-6305	Listeria monocytogenes
GCA_013626145.1	JABXMY000000000	SAMN13941825	2014L-6393	Listeria monocytogenes
GCA_013626115.1	JABXNA000000000	SAMN13941827	2014L-6448	Listeria monocytogenes
GCA_013626105.1	JABXMZ000000000	SAMN13941826	2014L-6411	Listeria monocytogenes
GCA_013626095.1	JABXNB000000000	SAMN13941828	2014L-6505	Listeria monocytogenes
GCA_013626055.1	JABXNC000000000	SAMN13941829	2014L-6652	Listeria monocytogenes
GCA_013626045.1	JABXND000000000	SAMN13941830	2014L-6657	Listeria monocytogenes
GCA_013626015.1	JABXNE000000000	SAMN13941831	2015L-6039	Listeria monocytogenes
GCA_013625995.1	JABXNF000000000	SAMN13941832	J0099	Listeria monocytogenes
GCA_013626005.1	JABXNG000000000	SAMN13941833	2013L-5444	Listeria monocytogenes
GCA_013625835.1	JABXNN000000000	SAMN13941840	F6212	Listeria monocytogenes
GCA_013625865.1	JABXNM000000000	SAMN13941839	2014L-6350	Listeria monocytogenes
GCA_013625845.1	JABXNO000000000	SAMN13941841	F6214	Listeria monocytogenes
GCA_013625945.1	JABXNH000000000	SAMN13941834	2013L-5683	Listeria monocytogenes
GCA_013625935.1	JABXNJ000000000	SAMN13941836	2014L-6166	Listeria monocytogenes
GCA_013625955.1	JABXNI000000000	SAMN13941835	2014L-6088	Listeria monocytogenes
GCA_013625895.1	JABXNK000000000	SAMN13941837	2014L-6256	Listeria monocytogenes
GCA_013625905.1	JABXNL000000000	SAMN13941838	2014L-6331	Listeria monocytogenes
GCA_013625785.1	JABXNP000000000	SAMN13941842	2012L-5522	Listeria seeligeri
GCA_013625775.1	JABXNQ000000000	SAMN13941843	J2259	Listeria seeligeri
GCA_013625745.1	JABXNR000000000	SAMN13941844	F4083	Listeria welshimeri

SRA Data Details

Parameter	Value
Data volume, Gbases	554
Data volume, Tbytes	0.30

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PulseNet tracked organisms

Escherichia, Shigella, Salmonella, Listeria, Campylobacter, Vibrio Raw sequence reads

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