Bacteria (ID 297942) - BioProject

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Accession: PRJNA297942 ID: 297942

Bacteria

Arabidopsis thaliana root-derived microbiota culture collections Genome sequencing and assembly

Arabidopsis leaf- and root-derived microbiota culture collections representing the majority of bacterial species that are reproducibly detectable by culture-independent community sequencing.

Accession	PRJNA297942
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Bai Y et al., "Functional overlap of the Arabidopsis leaf and root microbiota.", Nature, 2015 Dec 17;528(7582):364-9
Submission	Registration date: 2-Nov-2015 Max Planck Institute for Plant Breeding Research
Related Resources	ATSPHERE website
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5299
WGS master	194
Protein Sequences	959120
Publications
PubMed	1
Other datasets
BioSample	194
Assembly	194

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

165
29
194

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001428165.1	LMHN00000000	SAMN04155749	Root170	Achromobacter sp. Root170
GCA_001427425.1	LMGO00000000	SAMN04155833	Root565	Achromobacter sp. Root565
GCA_001428845.1	LMIU00000000	SAMN04155871	Root83	Achromobacter sp. Root83
GCA_001428645.1	LMIH00000000	SAMN04155761	Root217	Acidovorax sp. Root217
GCA_001428665.1	LMIJ00000000	SAMN04155762	Root219	Acidovorax sp. Root219
GCA_001429215.1	LMJC00000000	SAMN04155774	Root267	Acidovorax sp. Root267
GCA_001428965.1	LMJH00000000	SAMN04155777	Root275	Acidovorax sp. Root275
GCA_001425125.1	LMDQ00000000	SAMN04155796	Root402	Acidovorax sp. Root402
GCA_001427445.1	LMGP00000000	SAMN04155834	Root568	Acidovorax sp. Root568
GCA_001428225.1	LMHQ00000000	SAMN04155859	Root70	Acidovorax sp. Root70
GCA_001425285.1	LMED00000000	SAMN04155713	Root1280	Acinetobacter sp. Root1280
GCA_001428805.1	LMIS00000000	SAMN04155767	Root236	Aeromicrobium sp. Root236
GCA_001425755.1	LMDH00000000	SAMN04155790	Root344	Aeromicrobium sp. Root344
GCA_001426485.1	LMET00000000	SAMN04155809	Root472D3	Aeromicrobium sp. Root472D3
GCA_001426755.1	LMFJ00000000	SAMN04155819	Root495	Aeromicrobium sp. Root495
GCA_001425835.1	LMDP00000000	SAMN04155705	Root123D2	Afipia sp. Root123D2
GCA_001427265.1	LMFU00000000	SAMN04155736	Root1464	Agromyces sp. Root1464
GCA_001429165.1	LMIR00000000	SAMN04155870	Root81	Agromyces sp. Root81
GCA_001427865.1	LMHH00000000	SAMN04155853	Root672	Altererythrobacter sp. Root672
GCA_001424795.1	LMCL00000000	SAMN04155689	Root100	Aminobacter sp. DSM 101952
GCA_001426435.1	LMER00000000	SAMN04155808	Root456	Angustibacter sp. Root456
GCA_001429465.1	LMJP00000000	SAMN04155694	Root11	Bacillus sp. Root11
GCA_001429475.1	LMJQ00000000	SAMN04155720	Root131	Bacillus sp. Root131
GCA_001429365.1	LMJR00000000	SAMN04155737	Root147	Bacillus sp. Root147
GCA_001429385.1	LMJS00000000	SAMN04155768	Root239	Bacillus sp. Root239
GCA_001429445.1	LMJV00000000	SAMN04155877	Root920	Bacillus sp. Root920
GCA_001429395.1	LMJT00000000	SAMN04155793	Root381	Bosea sp. Root381
GCA_001429505.1	LMJW00000000	SAMN04155813	Root483D1	Bosea sp. Root483D1
GCA_001429415.1	LMJU00000000	SAMN04155852	Root670	Bosea sp. Root670
GCA_001425945.1	LMEB00000000	SAMN04155712	Root1279	Brevundimonas sp. Root1279
GCA_001426805.1	LMFL00000000	SAMN04155731	Root1423	Brevundimonas sp. Root1423
GCA_001427825.1	LMGT00000000	SAMN04155838	Root608	Brevundimonas sp. Root608
GCA_001426905.1	LMFQ00000000	SAMN04155734	Root1455	Caulobacter sp. Root1455
GCA_001426985.1	LMFX00000000	SAMN04155739	Root1472	Caulobacter sp. Root1472
GCA_001425725.1	LMDD00000000	SAMN04155788	Root342	Caulobacter sp. Root342
GCA_001425745.1	LMDF00000000	SAMN04155789	Root343	Caulobacter sp. Root343
GCA_001427165.1	LMFD00000000	SAMN04155816	Root487D2Y	Caulobacter sp. Root487D2Y
GCA_001427665.1	LMHC00000000	SAMN04155847	Root655	Caulobacter sp. Root655
GCA_001427685.1	LMHD00000000	SAMN04155848	Root656	Caulobacter sp. Root656
GCA_001426725.1	LMFG00000000	SAMN04155728	Root137	Cellulomonas sp. Root137
GCA_001426705.1	LMFC00000000	SAMN04155815	Root485	Cellulomonas sp. Root485
GCA_001429255.1	LMJI00000000	SAMN04155878	Root930	Cellulomonas sp. Root930
GCA_001424865.1	LMCR00000000	SAMN04155692	Root105	Devosia sp. Root105
GCA_001425235.1	LMEA00000000	SAMN04155800	Root413D1	Devosia sp. Root413D1
GCA_001426345.1	LMEM00000000	SAMN04155806	Root436	Devosia sp. Root436
GCA_001427605.1	LMGZ00000000	SAMN04155844	Root635	Devosia sp. Root635
GCA_001427875.1	LMHK00000000	SAMN04155856	Root685	Devosia sp. Root685
GCA_001427305.1	LMFZ00000000	SAMN04155740	Root1480D1	Duganella sp. Root1480D1
GCA_001428585.1	LMIC00000000	SAMN04155758	Root198D2	Duganella sp. Root198D2
GCA_001425005.1	LMDB00000000	SAMN04155787	Root336D2	Duganella sp. Root336D2
GCA_001425885.1	LMDT00000000	SAMN04155707	Root1252	Ensifer sp. Root1252
GCA_001425225.1	LMDX00000000	SAMN04155709	Root127	Ensifer sp. Root127
GCA_001426365.1	LMEN00000000	SAMN04155718	Root1298	Ensifer sp. Root1298
GCA_001426465.1	LMES00000000	SAMN04155722	Root1312	Ensifer sp. Root1312
GCA_001426785.1	LMFK00000000	SAMN04155730	Root142	Ensifer sp. Root142
GCA_001428785.1	LMIQ00000000	SAMN04155766	Root231	Ensifer sp. Root231
GCA_001429745.1	LMIX00000000	SAMN04155771	Root258	Ensifer sp. Root258
GCA_001429285.1	LMJJ00000000	SAMN04155778	Root278	Ensifer sp. Root278
GCA_001424825.1	LMCO00000000	SAMN04155781	Root31	Ensifer sp. Root31
GCA_001426275.1	LMEG00000000	SAMN04155803	Root423	Ensifer sp. Root423
GCA_001427045.1	LMGC00000000	SAMN04155827	Root558	Ensifer sp. Root558
GCA_001429125.1	LMII00000000	SAMN04155866	Root74	Ensifer sp. Root74
GCA_001429005.1	LMJM00000000	SAMN04155880	Root954	Ensifer sp. Root954
GCA_001428525.1	LMHW00000000	SAMN04155754	Root186	Flavobacterium sp. Root186
GCA_001427905.1	LMEF00000000	SAMN04155802	Root420	Flavobacterium sp. Root420
GCA_001429765.1	LMJB00000000	SAMN04155874	Root901	Flavobacterium sp. Root901
GCA_001429295.1	LMJL00000000	SAMN04155879	Root935	Flavobacterium sp. Root935
GCA_001428625.1	LMIE00000000	SAMN04155759	Root209	Hydrogenophaga sp. Root209
GCA_001424875.1	LMCT00000000	SAMN04155693	Root107	Kitasatospora sp. Root107
GCA_001429805.1	LMHX00000000	SAMN04155755	Root187	Kitasatospora sp. Root187
GCA_001424905.1	LMCU00000000	SAMN04155695	Root112D2	Leifsonia sp. Root112D2
GCA_001425325.1	LMEH00000000	SAMN04155715	Root1293	Leifsonia sp. Root1293
GCA_001428745.1	LMIO00000000	SAMN04155765	Root227	Leifsonia sp. Root227
GCA_001425085.1	LMDN00000000	SAMN04155794	Root4	Leifsonia sp. Root4
GCA_001427485.1	LMGR00000000	SAMN04155836	Root60	Leifsonia sp. Root60
GCA_001427225.1	LMFH00000000	SAMN04155818	Root494	Lysobacter sp. Root494
GCA_001427065.1	LMGE00000000	SAMN04155828	Root559	Lysobacter sp. Root559
GCA_001427505.1	LMGS00000000	SAMN04155837	Root604	Lysobacter sp. Root604
GCA_001427715.1	LMHF00000000	SAMN04155850	Root667	Lysobacter sp. Root667
GCA_001427785.1	LMHM00000000	SAMN04155857	Root690	Lysobacter sp. Root690
GCA_001428685.1	LMIK00000000	SAMN04155867	Root76	Lysobacter sp. Root76
GCA_001429785.1	LMJF00000000	SAMN04155875	Root916	Lysobacter sp. Root916
GCA_001429315.1	LMJN00000000	SAMN04155881	Root96	Lysobacter sp. Root96
GCA_001429345.1	LMJO00000000	SAMN04155882	Root983	Lysobacter sp. Root983
GCA_001426525.1	LMEW00000000	SAMN04155724	Root133	Massilia sp. Root133
GCA_001427325.1	LMGB00000000	SAMN04155741	Root1485	Massilia sp. Root1485
GCA_001425685.1	LMCY00000000	SAMN04155786	Root335	Massilia sp. Root335
GCA_001425045.1	LMDJ00000000	SAMN04155791	Root351	Massilia sp. Root351
GCA_001425265.1	LMEC00000000	SAMN04155801	Root418	Massilia sp. Root418
GCA_001425625.1	LMCP00000000	SAMN04155691	Root102	Mesorhizobium sp. Root102
GCA_001426965.1	LMFW00000000	SAMN04155738	Root1471	Mesorhizobium sp. Root1471
GCA_001427385.1	LMGJ00000000	SAMN04155746	Root157	Mesorhizobium sp. Root157
GCA_001428205.1	LMHP00000000	SAMN04155750	Root172	Mesorhizobium sp. Root172
GCA_001427285.1	LMFV00000000	SAMN04155824	Root552	Mesorhizobium sp. Root552
GCA_001427025.1	LMGA00000000	SAMN04155826	Root554	Mesorhizobium sp. Root554
GCA_001428185.1	LMHO00000000	SAMN04155858	Root695	Mesorhizobium sp. Root695
GCA_001425905.1	LMDY00000000	SAMN04155710	Root1272	Methylibium sp. Root1272
GCA_001426835.1	LMFN00000000	SAMN04155732	Root1433D1	Microbacterium sp. Root1433D1
GCA_001427145.1	LMGL00000000	SAMN04155747	Root166	Microbacterium sp. Root166
GCA_001428485.1	LMHS00000000	SAMN04155752	Root180	Microbacterium sp. Root180
GCA_001428975.1	LMJK00000000	SAMN04155779	Root280D1	Microbacterium sp. Root280D1
GCA_001425645.1	LMCS00000000	SAMN04155783	Root322	Microbacterium sp. Root322
GCA_001426925.1	LMFR00000000	SAMN04155822	Root53	Microbacterium sp. Root53
GCA_001426995.1	LMFY00000000	SAMN04155825	Root553	Microbacterium sp. Root553
GCA_001427525.1	LMGU00000000	SAMN04155839	Root61	Microbacterium sp. Root61
GCA_001426545.1	LMEZ00000000	SAMN04155726	Root135	Mycobacterium sp. Root135
GCA_001428895.1	LMJA00000000	SAMN04155773	Root265	Mycobacterium sp. Root265
GCA_001427185.1	LMFE00000000	SAMN04155727	Root136	Nocardia sp. Root136
GCA_001425025.1	LMDE00000000	SAMN04155700	Root122	Nocardioides sp. Root122
GCA_001425175.1	LMDV00000000	SAMN04155708	Root1257	Nocardioides sp. Root1257
GCA_001426745.1	LMFI00000000	SAMN04155729	Root140	Nocardioides sp. Root140
GCA_001427925.1	LMGG00000000	SAMN04155744	Root151	Nocardioides sp. Root151
GCA_001428565.1	LMIA00000000	SAMN04155757	Root190	Nocardioides sp. Root190
GCA_001428725.1	LMIN00000000	SAMN04155764	Root224	Nocardioides sp. Root224
GCA_001428825.1	LMIT00000000	SAMN04155769	Root240	Nocardioides sp. Root240
GCA_001427545.1	LMGV00000000	SAMN04155840	Root614	Nocardioides sp. Root614
GCA_001427795.1	LMHJ00000000	SAMN04155855	Root682	Nocardioides sp. Root682
GCA_001428765.1	LMIP00000000	SAMN04155869	Root79	Nocardioides sp. Root79
GCA_001428545.1	LMHZ00000000	SAMN04155756	Root189	Noviherbaspirillum sp. Root189
GCA_001429135.1	LMIL00000000	SAMN04155763	Root22	Oerskovia sp. Root22
GCA_001428945.1	LMJG00000000	SAMN04155876	Root918	Oerskovia sp. Root918
GCA_001426375.1	LMEO00000000	SAMN04155807	Root444D2	Paenibacillus sp. Root444D2
GCA_001426865.1	LMFO00000000	SAMN04155821	Root52	Paenibacillus sp. Root52
GCA_001425705.1	LMDC00000000	SAMN04155699	Root1217	Pelomonas sp. Root1217
GCA_001425055.1	LMDK00000000	SAMN04155703	Root1237	Pelomonas sp. Root1237
GCA_001426885.1	LMFP00000000	SAMN04155733	Root1444	Pelomonas sp. Root1444
GCA_001425165.1	LMDU00000000	SAMN04155798	Root405	Pelomonas sp. Root405
GCA_001427705.1	LMHE00000000	SAMN04155849	Root662	Pelomonas sp. Root662
GCA_001425915.1	LMDZ00000000	SAMN04155711	Root1277	Phenylobacterium sp. Root1277
GCA_001425305.1	LMEE00000000	SAMN04155714	Root1290	Phenylobacterium sp. Root1290
GCA_001429025.1	LMHT00000000	SAMN04155860	Root700	Phenylobacterium sp. Root700
GCA_001428705.1	LMIM00000000	SAMN04155868	Root77	Phenylobacterium sp. Root77
GCA_001426245.1	LMCM00000000	SAMN04155690	Root101	Phycicoccus sp. Root101
GCA_001427915.1	LMGM00000000	SAMN04155831	Root563	Phycicoccus sp. Root563
GCA_001426945.1	LMFS00000000	SAMN04155735	Root1462	Pseudolabrys sp. Root1462
GCA_001424925.1	LMCV00000000	SAMN04155784	Root329	Pseudomonas sp. Root329
GCA_001425105.1	LMDO00000000	SAMN04155795	Root401	Pseudomonas sp. Root401
GCA_001427125.1	LMGK00000000	SAMN04155830	Root562	Pseudomonas sp. Root562
GCA_001427465.1	LMGQ00000000	SAMN04155835	Root569	Pseudomonas sp. Root569
GCA_001427765.1	LMHI00000000	SAMN04155854	Root68	Pseudomonas sp. Root68
GCA_001429045.1	LMHY00000000	SAMN04155862	Root71	Pseudomonas sp. Root71
GCA_001429205.1	LMIY00000000	SAMN04155873	Root9	Pseudomonas sp. Root9
GCA_001427585.1	LMGY00000000	SAMN04155843	Root630	Pseudoxanthomonas sp. Root630
GCA_001427635.1	LMHA00000000	SAMN04155845	Root65	Pseudoxanthomonas sp. Root65
GCA_001425785.1	LMDI00000000	SAMN04155702	Root1221	Rhizobacter sp. Root1221
GCA_001425825.1	LMDM00000000	SAMN04155704	Root1238	Rhizobacter sp. Root1238
GCA_001428145.1	LMHL00000000	SAMN04155748	Root16D2	Rhizobacter sp. Root16D2
GCA_001424785.1	LMCN00000000	SAMN04155780	Root29	Rhizobacter sp. Root29
GCA_001425865.1	LMDS00000000	SAMN04155797	Root404	Rhizobacter sp. Root404
GCA_001424945.1	LMCW00000000	SAMN04155696	Root1203	Rhizobium sp. Root1203
GCA_001424965.1	LMCZ00000000	SAMN04155697	Root1204	Rhizobium sp. Root1204
GCA_001424985.1	LMDA00000000	SAMN04155698	Root1212	Rhizobium sp. Root1212
GCA_001426265.1	LMDG00000000	SAMN04155701	Root1220	Rhizobium sp. Root1220
GCA_001425145.1	LMDR00000000	SAMN04155706	Root1240	Rhizobium sp. Root1240
GCA_001426665.1	LMEY00000000	SAMN04155725	Root1334	Rhizobium sp. Root1334
GCA_001427345.1	LMGD00000000	SAMN04155742	Root149	Rhizobium sp. Root149
GCA_001428925.1	LMJD00000000	SAMN04155775	Root268	Rhizobium sp. Root268
GCA_001429245.1	LMJE00000000	SAMN04155776	Root274	Rhizobium sp. Root274
GCA_001426565.1	LMFA00000000	SAMN04155812	Root482	Rhizobium sp. Root482
GCA_001426685.1	LMFB00000000	SAMN04155814	Root483D2	Rhizobium sp. Root483D2
GCA_001427205.1	LMFF00000000	SAMN04155817	Root491	Rhizobium sp. Root491
GCA_001427405.1	LMGN00000000	SAMN04155832	Root564	Rhizobium sp. Root564
GCA_001427625.1	LMHB00000000	SAMN04155846	Root651	Rhizobium sp. Root651
GCA_001429725.1	LMHV00000000	SAMN04155861	Root708	Rhizobium sp. Root708
GCA_001429075.1	LMIF00000000	SAMN04155865	Root73	Rhizobium sp. Root73
GCA_001428465.1	LMHR00000000	SAMN04155751	Root179	Rhodanobacter sp. Root179
GCA_001426645.1	LMEX00000000	SAMN04155811	Root480	Rhodanobacter sp. Root480
GCA_001427365.1	LMGH00000000	SAMN04155829	Root561	Rhodanobacter sp. Root561
GCA_001427835.1	LMGW00000000	SAMN04155841	Root627	Rhodanobacter sp. Root627
GCA_001426255.1	LMEJ00000000	SAMN04155716	Root1294	Sphingomonas sp. Root1294
GCA_001428865.1	LMIV00000000	SAMN04155770	Root241	Sphingomonas sp. Root241
GCA_001426825.1	LMFM00000000	SAMN04155820	Root50	Sphingomonas sp. Root50
GCA_001429065.1	LMIB00000000	SAMN04155863	Root710	Sphingomonas sp. Root710
GCA_001428605.1	LMID00000000	SAMN04155864	Root720	Sphingomonas sp. Root720
GCA_001427085.1	LMGF00000000	SAMN04155743	Root1497	Sphingopyxis sp. Root1497
GCA_001427105.1	LMGI00000000	SAMN04155745	Root154	Sphingopyxis sp. Root154
GCA_001429105.1	LMIG00000000	SAMN04155760	Root214	Sphingopyxis sp. Root214
GCA_001426325.1	LMEL00000000	SAMN04155717	Root1295	Streptomyces sp. Root1295
GCA_001426405.1	LMEP00000000	SAMN04155719	Root1304	Streptomyces sp. Root1304
GCA_001426425.1	LMEQ00000000	SAMN04155721	Root1310	Streptomyces sp. Root1310
GCA_001426615.1	LMEU00000000	SAMN04155723	Root1319	Streptomyces sp. Root1319
GCA_001428885.1	LMIZ00000000	SAMN04155772	Root264	Streptomyces sp. Root264
GCA_001425805.1	LMDL00000000	SAMN04155792	Root369	Streptomyces sp. Root369
GCA_001426585.1	LMEI00000000	SAMN04155804	Root431	Streptomyces sp. Root431
GCA_001427245.1	LMFT00000000	SAMN04155823	Root55	Streptomyces sp. Root55
GCA_001427565.1	LMGX00000000	SAMN04155842	Root63	Streptomyces sp. Root63
GCA_001427745.1	LMHG00000000	SAMN04155851	Root66D1	Streptomyces sp. Root66D1
GCA_001428505.1	LMHU00000000	SAMN04155753	Root181	Terrabacter sp. Root181
GCA_001429185.1	LMIW00000000	SAMN04155872	Root85	Terrabacter sp. Root85
GCA_001424835.1	LMCQ00000000	SAMN04155782	Root318D1	Variovorax sp. Root318D1
GCA_001425205.1	LMDW00000000	SAMN04155799	Root411	Variovorax sp. Root411
GCA_001426595.1	LMEK00000000	SAMN04155805	Root434	Variovorax sp. Root434
GCA_001426505.1	LMEV00000000	SAMN04155810	Root473	Variovorax sp. Root473
GCA_001425665.1	LMCX00000000	SAMN04155785	Root332	Yonghaparkia sp. Root332

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Arabidopsis thaliana root-derived microbiota culture collections Genome sequencing and assembly

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