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Genome Information for Raphanus sativus
The project is targetting the whole genome of radish based on NGS sequencing strategy. The goal is construction of a reference genome sequence of Korean cultivar, WK10039.
| Accession | PRJNA239785 |
| Data Type | Genome sequencing and assembly |
| Scope | Monoisolate |
| Organism | Raphanus sativus[Taxonomy ID: 3726] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus; Raphanus sativus |
| Publications (total 3) Less... | - Yu HJ et al., "The radish genome database (RadishGD): an integrated information resource for radish genomics.", Database (Oxford), 2019 Jan 1;2019
More...- Yu HJ et al., "The radish genome database (RadishGD): an integrated information resource for radish genomics.", Database (Oxford), 2019 Jan 1;2019
- Jeong YM et al., "The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016;27(2):941-2
- Tanaka Y et al., "A complete mitochondrial genome sequence of Ogura-type male-sterile cytoplasm and its comparative analysis with that of normal cytoplasm in radish (Raphanus sativus L.).", BMC Genomics, 2012 Jul 31;13:352
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| Grants | - "De novo sequencing of the radish (Raphanus sativus L.) genome" (Grant ID PJ008019, Rural Development Administration of Korea)
|
| Submission | Registration date: 12-Dec-2014
- Myongji University
- Dr. Namshin Kim at KRIBB
|
| Relevance | Agricultural |
| Locus Tag Prefix | Rs2 |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 2576 |
| WGS master | 1 |
| Genomic DNA | 197 |
| Protein Sequences | 52483 |
| Publications |
| PubMed | 3 |
| PMC | 2 |
| Other datasets |
| BioSample | 1 |
| Assembly | 1 |
Related RefSeq Project
PRJNA344915 : Raphanus sativus cultivar:WK10039 RefSeq Genome sequencing