Human gut metagenome (ID 798244) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Protein

Accession: PRJNA798244 ID: 798244

Human gut metagenome

HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and Uncultured Human Gut Microbiota

PacBio HiFi sequencing read data on a fecal sample of a healthy Korean omnivore volunteer with Seqeul II platform.

Accession	PRJNA798244
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Kim CY et al., "HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota.", Nat Commun, 2022 Oct 26;13(1):6367
Submission	Registration date: 19-Oct-2022 Yonsei University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	102
WGS master	73
Genomic DNA	29
SRA Experiments	1
Protein Sequences	91195
Publications
PubMed	1
PMC	1
Other datasets
BioSample	103
Assembly	102

Assembly details:

Download

Assembly level

Number of Assemblies

Complete genome

Contig

Total

29
73
102

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_025993295.1	DAJPFF000000000		SAMN31100369	VEG01_HIC_0063	Adlercreutzia equolifaciens
GCA_025993435.1	DAJPFC000000000		SAMN31100363	OMN02_HAM_0033	Akkermansia muciniphila
GCA_025993285.1	DAJPFH000000000		SAMN31100372	VEG01_HAM_0048	Akkermansia muciniphila
GCA_025993455.1	DAJPEZ000000000		SAMN31100357	VEG02_HAM_0088	Akkermansiaceae bacterium
GCA_025757545.1		1	SAMN31100351	KR001_HAM_0061	Alistipes onderdonkii
GCA_025993525.1	DAJPEW000000000		SAMN31100352	OMN01_HAM_0111	Anaerobutyricum hallii
GCA_025757705.1		1	SAMN31100367	KR001_HIC_0005	Anaerostipes hadrus
GCA_025992315.1	DAJPHG000000000		SAMN31100429	VEG01_HIC_0010	Bacilli bacterium
GCA_025992255.1	DAJPHE000000000		SAMN31100427	OMN01_HAM_0078	Bacilli bacterium
GCA_025992235.1	DAJPHH000000000		SAMN31100430	VEG02_MFL_0321	Bacilli bacterium
GCA_025993635.1	DAJPEQ000000000		SAMN31100340	OMN01_HAM_0047	Bacteroidaceae bacterium
GCA_025993685.1	DAJPEN000000000		SAMN31100336	OMN01_HAM_0033	Bacteroides mediterraneensis
GCA_025757905.1		1	SAMN31100330	KR001_HIC_0032	Bacteroides ovatus
GCA_025757525.1		1	SAMN31100329	KR001_HAM_0001	Bacteroides ovatus
GCA_025757925.1		1	SAMN31100331	KR001_HAM_0006	Bacteroides thetaiotaomicron
GCA_025757585.1		1	SAMN31100332	KR001_HAM_0012	Bacteroides xylanisolvens
GCA_025993055.1	DAJPFS000000000		SAMN31100384	OMN01_HAM_0101	Bifidobacteriaceae bacterium
GCA_025992555.1	DAJPGR000000000		SAMN31100414	OMN01_MFL_0491	Bifidobacteriaceae bacterium
GCA_025992955.1	DAJPFX000000000		SAMN31100391	OMN01_HAM_0097	Bifidobacteriaceae bacterium
GCA_025992815.1	DAJPGG000000000		SAMN31100402	VEG02_MFL_0149	Bifidobacteriaceae bacterium
GCA_025757825.1		1	SAMN31100400	KR001_MFL_0031	Bifidobacteriaceae bacterium
GCA_025992735.1	DAJPGK000000000		SAMN31100406	VEG02_HAM_0083	Bifidobacterium adolescentis
GCA_025992935.1	DAJPFZ000000000		SAMN31100393	VEG02_HAM_0111	Bifidobacterium adolescentis
GCA_025992245.1	DAJPHD000000000		SAMN31100422	VEG01_HIC_0076	Clostridiaceae bacterium
GCA_025992485.1	DAJPGW000000000		SAMN31100419	VEG02_HAM_0080	Clostridiaceae bacterium
GCA_025992455.1	DAJPGX000000000		SAMN31100424	OMN01_HAM_0046	Clostridiaceae bacterium
GCA_025992435.1	DAJPGU000000000		SAMN31100417	OMN02_MFL_0087	Clostridiaceae bacterium
GCA_025992415.1	DAJPHB000000000		SAMN31100421	VEG02_HAM_0109	Clostridiaceae bacterium
GCA_025992365.1	DAJPGZ000000000		SAMN31100428	VEG01_MFL_0378	Clostridiaceae bacterium
GCA_025992345.1	DAJPHC000000000		SAMN31100426	VEG01_HAM_0010	Clostridiaceae bacterium
GCA_025992355.1	DAJPGY000000000		SAMN31100425	VEG01_HAM_0022	Clostridiaceae bacterium
GCA_025992265.1	DAJPHF000000000		SAMN31100420	VEG02_HIC_0086	Clostridiaceae bacterium
GCA_025757965.1		1	SAMN31100354	KR001_HAM_0047	Clostridiaceae bacterium
GCA_025757645.1		1	SAMN31100388	KR001_HIC_0007	Clostridiales bacterium
GCA_025992655.1	DAJPGL000000000		SAMN31100407	OMN01_HAM_0050	Clostridiales bacterium
GCA_025992765.1	DAJPGH000000000		SAMN31100403	OMN02_HAM_0021	Clostridiales bacterium
GCA_025993615.1	DAJPEO000000000		SAMN31100337	VEG02_HIC_0074	Clostridiales bacterium
GCA_025993545.1	DAJPET000000000		SAMN31100344	VEG02_HAM_0090	Clostridiales bacterium
GCA_025993505.1	DAJPEU000000000		SAMN31100347	VEG02_HAM_0012	Clostridiales bacterium
GCA_025993475.1	DAJPEX000000000		SAMN31100355	OMN02_HIC_0071	Clostridiales bacterium
GCA_025993075.1	DAJPFR000000000		SAMN31100383	OMN02_HAM_0034	Collinsella aerofaciens
GCA_025992535.1	DAJPGS000000000		SAMN31100415	OMN01_MFL_0267	Collinsella intestinalis
GCA_025757785.1		1	SAMN31100374	KR001_HAM_0048	Coprobacillaceae bacterium
GCA_025993335.1	DAJPFG000000000		SAMN31100371	VEG01_HIC_0072	Coprobacillaceae bacterium
GCA_025993255.1	DAJPFL000000000		SAMN31100377	OMN01_HAM_0039	Coprobacillaceae bacterium
GCA_025757745.1		1	SAMN31100390	KR001_HIC_0047	Coriobacteriaceae bacterium
GCA_025993025.1	DAJPFT000000000		SAMN31100385	VEG01_HAM_0083	Coriobacteriaceae bacterium
GCA_025993015.1	DAJPFV000000000		SAMN31100387	OMN01_HAM_0001	Coriobacteriaceae bacterium
GCA_025992995.1	DAJPFW000000000		SAMN31100389	VEG02_HAM_0051	Coriobacteriaceae bacterium
GCA_025992755.1	DAJPGF000000000		SAMN31100401	VEG01_HAM_0027	Coriobacteriaceae bacterium
GCA_025992705.1	DAJPGJ000000000		SAMN31100405	VEG01_HAM_0045	Coriobacteriaceae bacterium
GCA_025992855.1	DAJPGB000000000		SAMN31100395	OMN01_HAM_0037	Coriobacteriaceae bacterium
GCA_025992585.1	DAJPGP000000000		SAMN31100411	OMN02_HAM_0049	Eggerthellaceae bacterium
GCA_025993575.1	DAJPES000000000		SAMN31100343	VEG01_HAM_0001	Eggerthellaceae bacterium
GCA_025757665.1		1	SAMN31100334	KR001_HIC_0034	Escherichia coli
GCA_025993495.1	DAJPEV000000000		SAMN31100348	OMN02_HAM_0050	Faecalibacterium prausnitzii
GCA_025993415.1	DAJPFA000000000		SAMN31100359	OMN01_HIC_0060	Faecalibacterium prausnitzii
GCA_025993375.1	DAJPFB000000000		SAMN31100362	OMN01_HIC_0059	Faecalibacterium prausnitzii
GCA_025757765.1		1	SAMN31100368	KR001_HIC_0004	Faecalibacterium prausnitzii
GCA_025758085.1		1	SAMN31100335	KR001_HAM_0036	Flavonifractor plautii
GCA_025993655.1	DAJPEP000000000		SAMN31100339	VEG01_HIC_0053	Fusicatenibacter saccharivorans
GCA_025757605.1		1	SAMN31100349	KR001_HAM_0062	Fusobacterium varium
GCA_025993215.1	DAJPFM000000000		SAMN31100378	VEG02_HAM_0029	Lachnospiraceae bacterium
GCA_025758065.1		1	SAMN31100338	KR001_HIC_0035	Lachnospiraceae bacterium
GCA_025758025.1		1	SAMN31100350	KR001_MFL_0129	Lachnospiraceae bacterium
GCA_025757865.1		1	SAMN31100341	KR001_HAM_0003	Lachnospiraceae bacterium
GCA_025992465.1	DAJPGV000000000		SAMN31100418	VEG01_HAM_0019	Methanobrevibacter smithii
GCA_025992335.1	DAJPHA000000000		SAMN31100423	VEG01_HIC_0070	Methanobrevibacter smithii
GCA_025757845.1		1	SAMN31100365	KR001_HAM_0066	Oscillospiraceae bacterium
GCA_025757805.1		1	SAMN31100370	KR001_HIC_0044	Oscillospiraceae bacterium
GCA_025757565.1		1	SAMN31100360	KR001_HIC_0038	Oscillospiraceae bacterium
GCA_025757625.1		1	SAMN31100345	KR001_HAM_0045	Oscillospiraceae bacterium
GCA_025757685.1		1	SAMN31100412	KR001_HAM_0053	Oscillospiraceae bacterium
GCA_025758005.1		1	SAMN31100346	KR001_HAM_0051	Oscillospiraceae bacterium
GCA_025757985.1		1	SAMN31100361	KR001_HAM_0071	Oscillospiraceae bacterium
GCA_025757945.1		1	SAMN31100353	KR001_HAM_0005	Oscillospiraceae bacterium
GCA_025758045.1		1	SAMN31100358	KR001_HIC_0042	Oscillospiraceae bacterium
GCA_025993275.1	DAJPFE000000000		SAMN31100366	VEG02_HAM_0105	Oscillospiraceae bacterium
GCA_025993155.1	DAJPFO000000000		SAMN31100380	OMN02_MFL_0075	Oscillospiraceae bacterium
GCA_025993135.1	DAJPFN000000000		SAMN31100379	OMN01_HAM_0062	Oscillospiraceae bacterium
GCA_025993345.1	DAJPFD000000000		SAMN31100364	VEG02_HAM_0021	Oscillospiraceae bacterium
GCA_025993395.1	DAJPEY000000000		SAMN31100356	VEG01_HIC_0058	Oscillospiraceae bacterium
GCA_025992575.1	DAJPGN000000000		SAMN31100409	OMN02_HAM_0039	Oscillospiraceae bacterium
GCA_025992605.1	DAJPGO000000000		SAMN31100410	OMN01_HIC_0064	Oscillospiraceae bacterium
GCA_025992615.1	DAJPGQ000000000		SAMN31100413	OMN01_HAM_0053	Oscillospiraceae bacterium
GCA_025993095.1	DAJPFP000000000		SAMN31100381	VEG01_HAM_0042	Oscillospiraceae bacterium
GCA_025992685.1	DAJPGI000000000		SAMN31100404	OMN02_HAM_0017	Oscillospiraceae bacterium
GCA_025992795.1	DAJPGE000000000		SAMN31100399	VEG01_HAM_0041	Oscillospiraceae bacterium
GCA_025757725.1		1	SAMN31100333	KR001_HAM_0055	Parabacteroides distasonis
GCA_025993225.1	DAJPFI000000000		SAMN31100373	OMN01_HAM_0130	Phascolarctobacterium faecium
GCA_025993595.1	DAJPER000000000		SAMN31100342	OMN02_HAM_0070	Prevotellaceae bacterium
GCA_025993195.1	DAJPFJ000000000		SAMN31100375	VEG02_HIC_0073	Rikenellaceae bacterium
GCA_025992675.1	DAJPGM000000000		SAMN31100408	VEG01_HAM_0025	Ruminococcus bromii
GCA_025992835.1	DAJPGD000000000		SAMN31100398	VEG02_HAM_0055	Ruminococcus bromii
GCA_025992875.1	DAJPFY000000000		SAMN31100392	VEG02_HIC_0084	Ruminococcus bromii
GCA_025992865.1	DAJPGC000000000		SAMN31100396	VEG01_HAM_0002	Ruminococcus bromii
GCA_025993085.1	DAJPFQ000000000		SAMN31100382	VEG01_HAM_0009	Succinivibrionaceae bacterium
GCA_025992475.1	DAJPGT000000000		SAMN31100416	OMN02_HAM_0069	Sutterellaceae bacterium
GCA_025992975.1	DAJPFU000000000		SAMN31100386	VEG02_HAM_0068	Veillonellaceae bacterium
GCA_025993175.1	DAJPFK000000000		SAMN31100376	OMN02_HAM_0118	Veillonellaceae bacterium
GCA_025992895.1	DAJPGA000000000		SAMN31100394	OMN01_MFL_0295	Veillonellaceae bacterium
GCA_025757885.1		1	SAMN31100397	KR001_HIC_0043	Veillonellaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	30
Data volume, Mbytes	19224

BioProject

Result Filters

Display Settings:

Send to:

Links from Protein

Human gut metagenome

HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and Uncultured Human Gut Microbiota

Supplemental Content

Related information

LinkOut to external resources

Recent activity