Mycobacterium marinum (ID 858287) - BioProject

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Accession: PRJDB12467 ID: 858287

Mycobacterium marinum

Whole genome sequencing of Mycobacterium marinum

See Genome Information for Mycobacterium marinum

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32 additional projects are related by organism.

To prove transmission of Mycobacterium marinum in an aquarium tank, we conducted phylogenetic analyses based on whole genome sequencing data of M. marinum strains from animal and environmental sources.

Accession	PRJDB12467
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Mycobacterium marinum[Taxonomy ID: 1781] Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group; Mycobacterium marinum
Publications	Komine T et al., "Core single nucleotide polymorphism analysis reveals transmission of Mycobacterium marinum between animal and environmental sources in two aquaria.", J Fish Dis, 2023 May;46(5):507-516 Komine T et al., "Draft Genome Sequences of 25 Mycobacterium marinum Strains Isolated from Animals and Environmental Components in Aquaria and an Aquaculture Farm.", Microbiol Resour Announc, 2022 Oct 20;11(10):e0085122
Submission	Registration date: 12-Jul-2022 Nippon veterinary and life sciense university

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	10899
WGS master	25
SRA Experiments	37
Protein Sequences	128867
Publications
PubMed	2
PMC	1
Other datasets
BioSample	37
Assembly	25

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

25
25

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_024341725.1	BQLA00000000	SAMD00412634	NJB1907-f34b	Mycobacterium marinum
GCA_024341705.1	BQLB00000000	SAMD00412635	NJB1507	Mycobacterium marinum
GCA_024341685.1	BQLC00000000	SAMD00412636	NJB1604	Mycobacterium marinum
GCA_024341665.1	BQLD00000000	SAMD00412637	NJB1728-216S	Mycobacterium marinum
GCA_024341645.1	BQLE00000000	SAMD00412638	NJB1728-910S	Mycobacterium marinum
GCA_024341625.1	BQLF00000000	SAMD00412640	NJB1728-e22	Mycobacterium marinum
GCA_024341605.1	BQLG00000000	SAMD00412646	NJB1808-e29	Mycobacterium marinum
GCA_024341585.1	BQLH00000000	SAMD00412639	NJB1728-e18	Mycobacterium marinum
GCA_024341565.1	BQLI00000000	SAMD00412641	NJB1728-e24	Mycobacterium marinum
GCA_024341545.1	BQLJ00000000	SAMD00412642	NJB1728-f10	Mycobacterium marinum
GCA_024341525.1	BQLK00000000	SAMD00412643	NJB1728-f31	Mycobacterium marinum
GCA_024341505.1	BQLL00000000	SAMD00412644	NJB1800-1	Mycobacterium marinum
GCA_024341475.1	BQLM00000000	SAMD00412645	NJB1808	Mycobacterium marinum
GCA_024341455.1	BQLN00000000	SAMD00412647	NJB1809-1	Mycobacterium marinum
GCA_024341435.1	BQLO00000000	SAMD00412648	NJB1907-E11	Mycobacterium marinum
GCA_024341415.1	BQLP00000000	SAMD00412649	NJB1907-E19	Mycobacterium marinum
GCA_024341395.1	BQLY00000000	SAMD00412658	NJB1907-f44	Mycobacterium marinum
GCA_024341375.1	BQLX00000000	SAMD00412657	NJB1907-f34a	Mycobacterium marinum
GCA_024341305.1	BQLW00000000	SAMD00412656	NJB1907-f3	Mycobacterium marinum
GCA_024341265.1	BQLV00000000	SAMD00412655	NJB1907-f22	Mycobacterium marinum
GCA_024341245.1	BQLU00000000	SAMD00412654	NJB1907-E90	Mycobacterium marinum
GCA_024341225.1	BQLT00000000	SAMD00412653	NJB1907-E8	Mycobacterium marinum
GCA_024341205.1	BQLS00000000	SAMD00412652	NJB1907-E78	Mycobacterium marinum
GCA_024341185.1	BQLR00000000	SAMD00412651	NJB1907-E49	Mycobacterium marinum
GCA_024341165.1	BQLQ00000000	SAMD00412650	NJB1907-E39	Mycobacterium marinum

SRA Data Details

Parameter	Value
Data volume, Gbases	29
Data volume, Mbytes	14966

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Whole genome sequencing of Mycobacterium marinum

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