Pyrenophora tritici-repentis (ID 315205) - BioProject

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Accession: PRJNA315205 ID: 315205

Pyrenophora tritici-repentis

Pyrenophora tritici-repentis Genome sequencing and assembly

See Genome Information for Pyrenophora tritici-repentis

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8 additional projects are related by organism.

Part of this work is contribution to BioPlatforms Australia, Wheat Defence Consortium partnered from Australian National University, Curtin University, NSW Department of Primary Industry, Charles Sturt University, CSIRO and the Grains Research and Development Corporation.

Accession	PRJNA315205
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Pyrenophora tritici-repentis[Taxonomy ID: 45151] Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora; Pyrenophora tritici-repentis
Publications (total 3) Less...	Moolhuijzen PM et al., "A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology.", Microb Genom, 2022 Oct;8(10) More... Moolhuijzen PM et al., "A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology.", Microb Genom, 2022 Oct;8(10) Moolhuijzen P et al., "PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis.", BMC Genomics, 2020 Sep 21;21(1):645 Moolhuijzen P et al., "Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity.", BMC Genomics, 2018 Apr 23;19(1):279 Less...
Submission	Registration date: 25-May-2018 - Curtin University - Centre for Crop Disease Management
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	31080
WGS master	23
SRA Experiments	1
Protein Sequences	295058
Publications
PubMed	3
PMC	3
Other datasets
BioSample	24
Assembly	23

Assembly details:

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Assembly level

Number of Assemblies

7
15
1
23

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_003231365.1	MVBH00000000		SAMN04550940	239	Pyrenophora tritici-repentis
GCA_003231345.1	MVBI00000000		SAMN04550941	5213	Pyrenophora tritici-repentis
GCA_003231355.1	MVBG00000000		SAMN04550939	11137	Pyrenophora tritici-repentis
GCA_003171545.1	NQWZ00000000		SAMN07420928	ARCrossB10	Pyrenophora tritici-repentis
GCA_003231325.2	MVBF00000000	6	SAMN04550938	134	Pyrenophora tritici-repentis
GCA_003171515.3	NQIK00000000	11	SAMN07420926	M4	Pyrenophora tritici-repentis
GCA_003231425.2	NRDI00000000	1	SAMN07420927	86-124	Pyrenophora tritici-repentis
GCA_022578395.1	RXHM00000000		SAMN10386237	T199	Pyrenophora tritici-repentis
GCA_022578365.1	RXHL00000000		SAMN10386238	T205	Pyrenophora tritici-repentis
GCA_022544795.1	RXHN00000000		SAMN10386236	Alg130	Pyrenophora tritici-repentis
GCA_022544805.1	RXHK00000000		SAMN10386239	Alg215	Pyrenophora tritici-repentis
GCA_022837075.1	JAAFOX000000000	4	SAMN13951327	Ptr90-2	Pyrenophora tritici-repentis
GCA_022813065.1	JAHCSW000000000	7	SAMN19238098	L13-192	Pyrenophora tritici-repentis
GCA_022813025.1	JAHCYZ000000000	9	SAMN19238033	Biotrigo9-1	Pyrenophora tritici-repentis
GCA_022788425.1	PSOO00000000		SAMN08378473	SN002B	Pyrenophora tritici-repentis
GCA_022788445.1	PSOP00000000		SAMN08378472	SN001C	Pyrenophora tritici-repentis
GCA_022788405.1	PSOS00000000		SAMN08378469	EW4-4	Pyrenophora tritici-repentis
GCA_022788435.1	PSOR00000000		SAMN08378470	EW7m1	Pyrenophora tritici-repentis
GCA_022788415.1	PSOQ00000000		SAMN08378471	SN001A	Pyrenophora tritici-repentis
GCA_022788505.1	PSOT00000000		SAMN08378468	EW306-2-1	Pyrenophora tritici-repentis
GCA_022788515.1	PSOU00000000		SAMN08378467	CC142	Pyrenophora tritici-repentis
GCA_008692205.1	SAXQ00000000		SAMN10461900	V0001	Pyrenophora tritici-repentis
GCA_003231415.2	MUXC00000000	8	SAMN04550943	DW5	Pyrenophora tritici-repentis

SRA Data Details

Parameter	Value
Data volume, Gbases	3
Data volume, Mbytes	2341

Related RefSeq Project

PRJNA1128263 : Pyrenophora tritici-repentis RefSeq Genome sequencing and assembly

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Pyrenophora tritici-repentis

Pyrenophora tritici-repentis Genome sequencing and assembly

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