MDR isolates (ID 603241) - BioProject

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Accession: PRJNA603241 ID: 603241

MDR isolates

MDR isolates collected from influent and effluent of three WWTPs Genome sequencing and assembly

MDR isolates complete genomes

Accession	PRJNA603241
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Che Y et al., "High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria.", Microbiome, 2022 Jan 25;10(1):16
Submission	Registration date: 26-Jan-2020 The University of Hong Kong
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	343
Protein Sequences	382329
Publications
PubMed	1
PMC	1
Other datasets
BioSample	82
Assembly	82

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

82
82

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_022354565.1	3	SAMN13925603	SWHIN_111	Citrobacter portucalensis
GCA_022494235.1	5	SAMN13925566	STLEFF_47	Escherichia coli
GCA_022494315.1	4	SAMN13925570	STLIN_13	Escherichia coli
GCA_022494075.1	7	SAMN13925558	STLEFF_29	Escherichia coli
GCA_022353625.1	2	SAMN13925551	STIN_95	Escherichia coli
GCA_022354045.1	4	SAMN13925585	SWHEFF_58	Escherichia coli
GCA_022353925.1	2	SAMN13925591	SWHEFF_68	Escherichia coli
GCA_022353905.1	3	SAMN13925592	SWHEFF_69	Escherichia coli
GCA_023205415.1	5	SAMN13925525	STEFF_1	Escherichia coli
GCA_022493975.1	2	SAMN13925553	STLE2	Klebsiella pneumoniae
GCA_022494475.1	4	SAMN13925577	STLIN_7	Klebsiella pneumoniae
GCA_022494395.1	7	SAMN13925574	STLIN_3	Klebsiella pneumoniae
GCA_022494375.1	6	SAMN13925573	STLIN_19	Klebsiella pneumoniae
GCA_022494335.1	2	SAMN13925571	STLIN_14	Klebsiella pneumoniae
GCA_022494255.1	5	SAMN13925567	STLIN_10	Klebsiella pneumoniae
GCA_022494215.1	5	SAMN13925565	STLEFF_44	Klebsiella pneumoniae
GCA_022494195.1	3	SAMN13925564	STLEFF_42	Klebsiella pneumoniae
GCA_022354545.1	2	SAMN13925604	SWHIN_114	Klebsiella pneumoniae
GCA_022354725.1	2	SAMN13925595	SWHIN_100	Klebsiella pneumoniae
GCA_022354665.1	3	SAMN13925598	SWHIN_106	Klebsiella pneumoniae
GCA_022353985.1	4	SAMN13925588	SWHEFF_62	Klebsiella pneumoniae
GCA_022353825.1	4	SAMN13925541	STIN_77	Klebsiella pneumoniae
GCA_022353805.1	2	SAMN13925542	STIN_79	Klebsiella pneumoniae
GCA_022353765.1	3	SAMN13925544	STIN_84	Klebsiella pneumoniae
GCA_022353725.1	2	SAMN13925546	STIN_88	Klebsiella pneumoniae
GCA_022353705.1	6	SAMN13925547	STIN_90	Klebsiella pneumoniae
GCA_022353665.1	5	SAMN13925549	STIN_93	Klebsiella pneumoniae
GCA_022353645.1	5	SAMN13925550	STIN_94	Klebsiella pneumoniae
GCA_022354365.1	3	SAMN13925526	STEFF_2	Klebsiella pneumoniae
GCA_022354285.1	8	SAMN13925530	STEFF_14	Klebsiella pneumoniae
GCA_022354625.1	3	SAMN13925600	SWHIN_108	Klebsiella pneumoniae
GCA_022354165.1	4	SAMN13925579	SWHE1	Klebsiella pneumoniae
GCA_022354125.1	2	SAMN13925581	SWHE3	Klebsiella pneumoniae
GCA_022354105.1	4	SAMN13925582	SWHE4	Klebsiella pneumoniae
GCA_022353585.1	5	SAMN13925535	STEFF_19	Klebsiella pneumoniae
GCA_022353525.1	5	SAMN13925539	STEFF_9	Klebsiella pneumoniae
GCA_022353865.1	5	SAMN13925594	SWHEFF_72	Klebsiella quasipneumoniae
GCA_022494055.1	7	SAMN13925557	STLEFF_28	Klebsiella quasipneumoniae
GCA_022023795.1	3	SAMN13925536	STEFF_21	Klebsiella quasipneumoniae
GCA_022353845.1	1	SAMN13925540	STIN_74	Proteus mirabilis
GCA_022354605.1	1	SAMN13925601	SWHIN_109	Proteus mirabilis
GCA_022354265.1	3	SAMN13925531	STEFF_15	Raoultella ornithinolytica
GCA_022354145.1	3	SAMN13925580	SWHE2	Shigella dysenteriae
GCA_022354085.1	2	SAMN13925583	SWHEFF_49	Shigella dysenteriae
GCA_022354065.1	3	SAMN13925584	SWHEFF_51	Shigella dysenteriae
GCA_022354585.1	3	SAMN13925602	SWHIN_110	Shigella flexneri
GCA_022354245.1	2	SAMN13925532	STEFF_16	Shigella flexneri
GCA_022354225.1	3	SAMN13925533	STEFF_17	Shigella flexneri
GCA_022354205.1	12	SAMN13925605	SWHIN_116	Shigella flexneri
GCA_022354185.1	5	SAMN13925606	SWHIN_97	Shigella flexneri
GCA_022354345.1	11	SAMN13925527	STEFF_3	Shigella flexneri
GCA_022354325.1	5	SAMN13925528	STEFF_10	Shigella flexneri
GCA_022354305.1	5	SAMN13925529	STEFF_12	Shigella flexneri
GCA_022353885.1	4	SAMN13925593	SWHEFF_71	Shigella flexneri
GCA_022353965.1	3	SAMN13925589	SWHEFF_64	Shigella flexneri
GCA_022353945.1	6	SAMN13925590	SWHEFF_67	Shigella flexneri
GCA_022354025.1	7	SAMN13925586	SWHEFF_59	Shigella flexneri
GCA_022354005.1	4	SAMN13925587	SWHEFF_60	Shigella flexneri
GCA_022353685.1	7	SAMN13925548	STIN_92	Shigella flexneri
GCA_022353745.1	5	SAMN13925545	STIN_87	Shigella flexneri
GCA_022353785.1	3	SAMN13925543	STIN_80	Shigella flexneri
GCA_022353565.1	4	SAMN13925537	STEFF_22	Shigella flexneri
GCA_022353545.1	3	SAMN13925538	STEFF_24	Shigella flexneri
GCA_022353605.1	2	SAMN13925534	STEFF_18	Shigella flexneri
GCA_022354645.1	7	SAMN13925599	SWHIN_107	Shigella flexneri
GCA_022354705.1	6	SAMN13925596	SWHIN_101	Shigella flexneri
GCA_022354685.1	4	SAMN13925597	SWHIN_104	Shigella flexneri
GCA_022494295.1	4	SAMN13925569	STLIN_12	Shigella flexneri
GCA_022494275.1	5	SAMN13925568	STLIN_11	Shigella flexneri
GCA_022494035.1	6	SAMN13925556	STLEFF_27	Shigella flexneri
GCA_022494015.1	2	SAMN13925555	STLE4	Shigella flexneri
GCA_022493995.1	3	SAMN13925554	STLE3	Shigella flexneri
GCA_022494175.1	4	SAMN13925563	STLEFF_38	Shigella flexneri
GCA_022494155.1	4	SAMN13925562	STLEFF_36	Shigella flexneri
GCA_022494135.1	3	SAMN13925561	STLEFF_35	Shigella flexneri
GCA_022494115.1	7	SAMN13925560	STLEFF_34	Shigella flexneri
GCA_022494095.1	5	SAMN13925559	STLEFF_33	Shigella flexneri
GCA_022494355.1	6	SAMN13925572	STLIN_17	Shigella flexneri
GCA_022494455.1	2	SAMN13925578	STLIN_8	Shigella flexneri
GCA_022494435.1	6	SAMN13925576	STLIN_6	Shigella flexneri
GCA_022494415.1	4	SAMN13925575	STLIN_4	Shigella flexneri
GCA_022493955.1	2	SAMN13925552	STLE1	Shigella flexneri

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MDR isolates

MDR isolates collected from influent and effluent of three WWTPs Genome sequencing and assembly

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