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Links from Protein

Accession: PRJDB11069 ID: 728010

marine metagenome

Metaepigenomic anaysis of pelagic microbial communities

In this study, we conducted metaepigenomic analysis using microbial samples collected from four different depth layers at the North-West Pacific Ocean.
AccessionPRJDB11069
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
PublicationsHiraoka S et al., "Diverse DNA modification in marine prokaryotic and viral communities.", Nucleic Acids Res, 2022 Feb 22;50(3):1531-1550
Grants
  • JP19K21203, the Japan Society for the Promotion of Science
  • JP20K15444, the Japan Society for the Promotion of Science
SubmissionRegistration date: 7-May-2021
Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8697
WGS master233
Genomic DNA163
SRA Experiments9
Protein Sequences297763
Publications
PubMed1
PMC1
Other datasets
BioSample400
Assembly396
Assembly details:
Assembly levelNumber of Assemblies
233
233
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_019654855.1ContigBPEO00000000SAMD00291072
Ct9H_300m.P31
GCA_019652795.1ContigBPAV00000000SAMD00290975
Ct9H_90m.P5
GCA_019652915.1ContigBPBB00000000SAMD00290981
Ct9H_90m.P11
GCA_019654755.1ContigBPEJ00000000SAMD00291067
Ct9H_300m.P26
GCA_019654475.1ContigBPDV00000000SAMD00291053
Ct9H_300m.P12
GCA_019653935.1ContigBPCU00000000SAMD00291026
CM1_200m.P26
GCA_019653915.1ContigBPCT00000000SAMD00291025
CM1_200m.P25
GCA_019654735.1ContigBPEI00000000SAMD00291066
Ct9H_300m.P25
GCA_019653295.1ContigBPBU00000000SAMD00291000
Ct9H_90m.P30
GCA_019653035.1ContigBPBH00000000SAMD00290987
Ct9H_90m.P17
GCA_019652895.1ContigBPBA00000000SAMD00290980
Ct9H_90m.P10
GCA_019651975.1ContigBOZJ00000000SAMD00290937
CM1_5m.P97
GCA_019651835.1ContigBOZC00000000SAMD00290930
CM1_5m.P90
GCA_019651015.1ContigBOXN00000000SAMD00290889
CM1_5m.P49
GCA_019649735.1ContigBOWQ00000000SAMD00290866
CM1_5m.P26
GCA_019649375.1ContigBOWA00000000SAMD00290850
CM1_5m.P10
GCA_019649795.1ContigBOWT00000000SAMD00290869
CM1_5m.P29
GCA_019649615.1ContigBOWK00000000SAMD00290860
CM1_5m.P20
GCA_019651235.1ContigBOXY00000000SAMD00290900
CM1_5m.P60
GCA_019651175.1ContigBOXV00000000SAMD00290897
CM1_5m.P57
GCA_019651155.1ContigBOXU00000000SAMD00290896
CM1_5m.P56
GCA_019651375.1ContigBOYF00000000SAMD00290907
CM1_5m.P67
GCA_019650955.1ContigBOXK00000000SAMD00290886
CM1_5m.P46
GCA_019650635.1ContigBOXE00000000SAMD00290880
CM1_5m.P40
GCA_019651935.1ContigBOZH00000000SAMD00290935
CM1_5m.P95
GCA_019651655.1ContigBOYT00000000SAMD00290921
CM1_5m.P81
GCA_019651635.1ContigBOYS00000000SAMD00290920
CM1_5m.P80
GCA_019652035.1ContigBOZM00000000SAMD00290940
CM1_5m.P100
GCA_019652335.1ContigBPAB00000000SAMD00290955
CM1_5m.P115
GCA_019652315.1ContigBPAA00000000SAMD00290954
CM1_5m.P114
GCA_019652235.1ContigBOZW00000000SAMD00290950
CM1_5m.P110
GCA_019652575.1ContigBPAK00000000SAMD00290964
CM1_5m.P124
GCA_019652475.1ContigBPAF00000000SAMD00290959
CM1_5m.P119
GCA_019652395.1ContigBPAE00000000SAMD00290958
CM1_5m.P118
GCA_019652375.1ContigBPAD00000000SAMD00290957
CM1_5m.P117
GCA_019653515.1ContigBPCA00000000SAMD00291006
CM1_200m.P6
GCA_019652535.1ContigBPAI00000000SAMD00290962
CM1_5m.P122
GCA_019652515.1ContigBPAH00000000SAMD00290961
CM1_5m.P121
GCA_019652175.1ContigBOZT00000000SAMD00290947
CM1_5m.P107
GCA_019651195.1ContigBOXW00000000SAMD00290898
CM1_5m.P58
GCA_019652215.1ContigBOZV00000000SAMD00290949
CM1_5m.P109
GCA_019652155.1ContigBOZS00000000SAMD00290946
CM1_5m.P106
GCA_019651775.1ContigBOYZ00000000SAMD00290927
CM1_5m.P87
GCA_019652995.1ContigBPBF00000000SAMD00290985
Ct9H_90m.P15
GCA_019652835.1ContigBPAX00000000SAMD00290977
Ct9H_90m.P7
GCA_019651075.1ContigBOXQ00000000SAMD00290892
CM1_5m.P52
GCA_019651315.1ContigBOYC00000000SAMD00290904
CM1_5m.P64
GCA_019650835.1ContigBOXI00000000SAMD00290884
CM1_5m.P44
GCA_019650355.1ContigBOWX00000000SAMD00290873
CM1_5m.P33
GCA_019649255.1ContigBOVU00000000SAMD00290844
CM1_5m.P4
GCA_019653595.1ContigBPCE00000000SAMD00291010
CM1_200m.P10
GCA_019653095.1ContigBPBK00000000SAMD00290990
Ct9H_90m.P20
GCA_019653315.1ContigBPBV00000000SAMD00291001
CM1_200m.P1
GCA_019654035.1ContigBPCZ00000000SAMD00291031
CM1_200m.P31
GCA_019654415.1ContigBPDS00000000SAMD00291050
Ct9H_300m.P9
GCA_019654275.1ContigBPDL00000000SAMD00291043
Ct9H_300m.P2
GCA_019654715.1ContigBPEH00000000SAMD00291065
Ct9H_300m.P24
GCA_019654595.1ContigBPEB00000000SAMD00291059
Ct9H_300m.P18
GCA_019654815.1ContigBPEM00000000SAMD00291070
Ct9H_300m.P29
GCA_019654575.1ContigBPEA00000000SAMD00291058
Ct9H_300m.P17
GCA_019654335.1ContigBPDO00000000SAMD00291046
Ct9H_300m.P5
GCA_019653495.1ContigBPBZ00000000SAMD00291005
CM1_200m.P5
GCA_019653675.1ContigBPCH00000000SAMD00291013
CM1_200m.P13
GCA_019649695.1ContigBOWO00000000SAMD00290864
CM1_5m.P24
GCA_019649495.1ContigBOWG00000000SAMD00290856
CM1_5m.P16
GCA_019649235.1ContigBOVT00000000SAMD00290843
CM1_5m.P3
GCA_019650995.1ContigBOXM00000000SAMD00290888
CM1_5m.P48
GCA_019651455.1ContigBOYJ00000000SAMD00290911
CM1_5m.P71
GCA_019651595.1ContigBOYQ00000000SAMD00290918
CM1_5m.P78
GCA_019653015.1ContigBPBG00000000SAMD00290986
Ct9H_90m.P16
GCA_019653835.1ContigBPCP00000000SAMD00291021
CM1_200m.P21
GCA_019651715.1ContigBOYW00000000SAMD00290924
CM1_5m.P84
GCA_019651855.1ContigBOZD00000000SAMD00290931
CM1_5m.P91
GCA_019652675.1ContigBPAP00000000SAMD00290969
CM1_5m.P129
GCA_019653955.1ContigBPCV00000000SAMD00291027
CM1_200m.P27
GCA_019654075.1ContigBPDB00000000SAMD00291033
CM1_200m.P33
GCA_019654155.1ContigBPDF00000000SAMD00291037
CM1_200m.P37
GCA_019654115.1ContigBPDD00000000SAMD00291035
CM1_200m.P35
GCA_019653455.1ContigBPBX00000000SAMD00291003
CM1_200m.P3
GCA_019653555.1ContigBPCC00000000SAMD00291008
CM1_200m.P8
GCA_019653535.1ContigBPCB00000000SAMD00291007
CM1_200m.P7
GCA_019654455.1ContigBPDU00000000SAMD00291052
Ct9H_300m.P11
GCA_019654775.1ContigBPEK00000000SAMD00291068
Ct9H_300m.P27
GCA_019651335.1ContigBOYD00000000SAMD00290905
CM1_5m.P65
GCA_019649675.1ContigBOWN00000000SAMD00290863
CM1_5m.P23
GCA_019652735.1ContigBPAS00000000SAMD00290972
Ct9H_90m.P2
GCA_019654615.1ContigBPEC00000000SAMD00291060
Ct9H_300m.P19
GCA_019653715.1ContigBPCJ00000000SAMD00291015
CM1_200m.P15
GCA_019654195.1ContigBPDH00000000SAMD00291039
CM1_200m.P39
GCA_019654175.1ContigBPDG00000000SAMD00291038
CM1_200m.P38
GCA_019653855.1ContigBPCQ00000000SAMD00291022
CM1_200m.P22
GCA_019653975.1ContigBPCW00000000SAMD00291028
CM1_200m.P28
GCA_019650855.1ContigBOXJ00000000SAMD00290885
CM1_5m.P45
GCA_019651095.1ContigBOXR00000000SAMD00290893
CM1_5m.P53
GCA_019651415.1ContigBOYH00000000SAMD00290909
CM1_5m.P69
GCA_019652755.1ContigBPAT00000000SAMD00290973
Ct9H_90m.P3
GCA_019651535.1ContigBOYN00000000SAMD00290915
CM1_5m.P75
GCA_019650735.1ContigBOXF00000000SAMD00290881
CM1_5m.P41
GCA_019649855.1ContigBOWW00000000SAMD00290872
CM1_5m.P32
GCA_019651215.1ContigBOXX00000000SAMD00290899
CM1_5m.P59
GCA_019651695.1ContigBOYV00000000SAMD00290923
CM1_5m.P83
GCA_019652055.1ContigBOZN00000000SAMD00290941
CM1_5m.P101
GCA_019652075.1ContigBOZO00000000SAMD00290942
CM1_5m.P102
GCA_019652275.1ContigBOZY00000000SAMD00290952
CM1_5m.P112
GCA_019650435.1ContigBOXA00000000SAMD00290876
CM1_5m.P36
GCA_019651255.1ContigBOXZ00000000SAMD00290901
CM1_5m.P61
GCA_019651295.1ContigBOYB00000000SAMD00290903
CM1_5m.P63
GCA_019652195.1ContigBOZU00000000SAMD00290948
CM1_5m.P108
GCA_019652115.1ContigBOZQ00000000SAMD00290944
CM1_5m.P104
GCA_019652095.1ContigBOZP00000000SAMD00290943
CM1_5m.P103
GCA_019651955.1ContigBOZI00000000SAMD00290936
CM1_5m.P96
GCA_019651755.1ContigBOYY00000000SAMD00290926
CM1_5m.P86
GCA_019651815.1ContigBOZB00000000SAMD00290929
CM1_5m.P89
GCA_019652815.1ContigBPAW00000000SAMD00290976
Ct9H_90m.P6
GCA_019652775.1ContigBPAU00000000SAMD00290974
Ct9H_90m.P4
GCA_019652615.1ContigBPAM00000000SAMD00290966
CM1_5m.P126
GCA_019652595.1ContigBPAL00000000SAMD00290965
CM1_5m.P125
GCA_019652635.1ContigBPAN00000000SAMD00290967
CM1_5m.P127
GCA_019652555.1ContigBPAJ00000000SAMD00290963
CM1_5m.P123
GCA_019649835.1ContigBOWV00000000SAMD00290871
CM1_5m.P31
GCA_019650375.1ContigBOWY00000000SAMD00290874
CM1_5m.P34
GCA_019649545.1ContigBOWH00000000SAMD00290857
CM1_5m.P17
GCA_019649715.1ContigBOWP00000000SAMD00290865
CM1_5m.P25
GCA_019649595.1ContigBOWJ00000000SAMD00290859
CM1_5m.P19
GCA_019649655.1ContigBOWM00000000SAMD00290862
CM1_5m.P22
GCA_019649415.1ContigBOWC00000000SAMD00290852
CM1_5m.P12
GCA_019649395.1ContigBOWB00000000SAMD00290851
CM1_5m.P11
GCA_019653775.1ContigBPCM00000000SAMD00291018
CM1_200m.P18
GCA_019653895.1ContigBPCS00000000SAMD00291024
CM1_200m.P24
GCA_019654235.1ContigBPDJ00000000SAMD00291041
CM1_200m.P41
GCA_019654215.1ContigBPDI00000000SAMD00291040
CM1_200m.P40
GCA_019654135.1ContigBPDE00000000SAMD00291036
CM1_200m.P36
GCA_019654315.1ContigBPDN00000000SAMD00291045
Ct9H_300m.P4
GCA_019654295.1ContigBPDM00000000SAMD00291044
Ct9H_300m.P3
GCA_019654395.1ContigBPDR00000000SAMD00291049
Ct9H_300m.P8
GCA_019654355.1ContigBPDP00000000SAMD00291047
Ct9H_300m.P6
GCA_019653695.1ContigBPCI00000000SAMD00291014
CM1_200m.P14
GCA_019653655.1ContigBPCG00000000SAMD00291012
CM1_200m.P12
GCA_019653575.1ContigBPCD00000000SAMD00291009
CM1_200m.P9
GCA_019653235.1ContigBPBR00000000SAMD00290997
Ct9H_90m.P27
GCA_019653075.1ContigBPBJ00000000SAMD00290989
Ct9H_90m.P19
GCA_019653055.1ContigBPBI00000000SAMD00290988
Ct9H_90m.P18
GCA_019653195.1ContigBPBP00000000SAMD00290995
Ct9H_90m.P25
GCA_019653135.1ContigBPBM00000000SAMD00290992
Ct9H_90m.P22
GCA_019654635.1ContigBPED00000000SAMD00291061
Ct9H_300m.P20
GCA_019654515.1ContigBPDX00000000SAMD00291055
Ct9H_300m.P14
GCA_019654495.1ContigBPDW00000000SAMD00291054
Ct9H_300m.P13
GCA_019654675.1ContigBPEF00000000SAMD00291063
Ct9H_300m.P22
GCA_019654535.1ContigBPDY00000000SAMD00291056
Ct9H_300m.P15
GCA_019651875.1ContigBOZE00000000SAMD00290932
CM1_5m.P92
GCA_019651515.1ContigBOYM00000000SAMD00290914
CM1_5m.P74
GCA_019649635.1ContigBOWL00000000SAMD00290861
CM1_5m.P21
GCA_019651495.1ContigBOYL00000000SAMD00290913
CM1_5m.P73
GCA_019651135.1ContigBOXT00000000SAMD00290895
CM1_5m.P55
GCA_019652255.1ContigBOZX00000000SAMD00290951
CM1_5m.P111
GCA_019649575.1ContigBOWI00000000SAMD00290858
CM1_5m.P18
GCA_019649215.1ContigBOVS00000000SAMD00290842
CM1_5m.P2
GCA_019649195.1ContigBOVR00000000SAMD00290841
CM1_5m.P1
GCA_019649295.1ContigBOVW00000000SAMD00290846
CM1_5m.P6
GCA_019649355.1ContigBOVZ00000000SAMD00290849
CM1_5m.P9
GCA_019649335.1ContigBOVY00000000SAMD00290848
CM1_5m.P8
GCA_019652135.1ContigBOZR00000000SAMD00290945
CM1_5m.P105
GCA_019651675.1ContigBOYU00000000SAMD00290922
CM1_5m.P82
GCA_019651615.1ContigBOYR00000000SAMD00290919
CM1_5m.P79
GCA_019652655.1ContigBPAO00000000SAMD00290968
CM1_5m.P128
GCA_019652715.1ContigBPAR00000000SAMD00290971
Ct9H_90m.P1
GCA_019652975.1ContigBPBE00000000SAMD00290984
Ct9H_90m.P14
GCA_019650975.1ContigBOXL00000000SAMD00290887
CM1_5m.P47
GCA_019650755.1ContigBOXG00000000SAMD00290882
CM1_5m.P42
GCA_019654435.1ContigBPDT00000000SAMD00291051
Ct9H_300m.P10
GCA_019654835.1ContigBPEN00000000SAMD00291071
Ct9H_300m.P30
GCA_019654055.1ContigBPDA00000000SAMD00291032
CM1_200m.P32
GCA_019653115.1ContigBPBL00000000SAMD00290991
Ct9H_90m.P21
GCA_019653175.1ContigBPBO00000000SAMD00290994
Ct9H_90m.P24
GCA_019653155.1ContigBPBN00000000SAMD00290993
Ct9H_90m.P23
GCA_019653215.1ContigBPBQ00000000SAMD00290996
Ct9H_90m.P26
GCA_019653635.1ContigBPCF00000000SAMD00291011
CM1_200m.P11
GCA_019653875.1ContigBPCR00000000SAMD00291023
CM1_200m.P23
GCA_019653735.1ContigBPCK00000000SAMD00291016
CM1_200m.P16
GCA_019654695.1ContigBPEG00000000SAMD00291064
Ct9H_300m.P23
GCA_019651115.1ContigBOXS00000000SAMD00290894
CM1_5m.P54
GCA_019653255.1ContigBPBS00000000SAMD00290998
Ct9H_90m.P28
GCA_019651995.1ContigBOZK00000000SAMD00290938
CM1_5m.P98
GCA_019649315.1ContigBOVX00000000SAMD00290847
CM1_5m.P7
GCA_019649815.1ContigBOWU00000000SAMD00290870
CM1_5m.P30
GCA_019651475.1ContigBOYK00000000SAMD00290912
CM1_5m.P72
GCA_019651435.1ContigBOYI00000000SAMD00290910
CM1_5m.P70
GCA_019653395.1ContigBPBW00000000SAMD00291002
CM1_200m.P2
GCA_019654255.1ContigBPDK00000000SAMD00291042
Ct9H_300m.P1
GCA_019651055.1ContigBOXP00000000SAMD00290891
CM1_5m.P51
GCA_019651555.1ContigBOYO00000000SAMD00290916
CM1_5m.P76
GCA_019649475.1ContigBOWF00000000SAMD00290855
CM1_5m.P15
GCA_019649775.1ContigBOWS00000000SAMD00290868
CM1_5m.P28
GCA_019649435.1ContigBOWD00000000SAMD00290853
CM1_5m.P13
GCA_019651395.1ContigBOYG00000000SAMD00290908
CM1_5m.P68
GCA_019651355.1ContigBOYE00000000SAMD00290906
CM1_5m.P66
GCA_019651795.1ContigBOZA00000000SAMD00290928
CM1_5m.P88
GCA_019652295.1ContigBOZZ00000000SAMD00290953
CM1_5m.P113
GCA_019652955.1ContigBPBD00000000SAMD00290983
Ct9H_90m.P13
GCA_019652875.1ContigBPAZ00000000SAMD00290979
Ct9H_90m.P9
GCA_019652855.1ContigBPAY00000000SAMD00290978
Ct9H_90m.P8
GCA_019652495.1ContigBPAG00000000SAMD00290960
CM1_5m.P120
GCA_019654015.1ContigBPCY00000000SAMD00291030
CM1_200m.P30
GCA_019653815.1ContigBPCO00000000SAMD00291020
CM1_200m.P20
GCA_019654655.1ContigBPEE00000000SAMD00291062
Ct9H_300m.P21
GCA_019654555.1ContigBPDZ00000000SAMD00291057
Ct9H_300m.P16
GCA_019654795.1ContigBPEL00000000SAMD00291069
Ct9H_300m.P28
GCA_019651735.1ContigBOYX00000000SAMD00290925
CM1_5m.P85
GCA_019651035.1ContigBOXO00000000SAMD00290890
CM1_5m.P50
GCA_019653475.1ContigBPBY00000000SAMD00291004
CM1_200m.P4
GCA_019651275.1ContigBOYA00000000SAMD00290902
CM1_5m.P62
GCA_019649455.1ContigBOWE00000000SAMD00290854
CM1_5m.P14
GCA_019652355.1ContigBPAC00000000SAMD00290956
CM1_5m.P116
GCA_019651575.1ContigBOYP00000000SAMD00290917
CM1_5m.P77
GCA_019650595.1ContigBOXD00000000SAMD00290879
CM1_5m.P39
GCA_019650515.1ContigBOXC00000000SAMD00290878
CM1_5m.P38
GCA_019651895.1ContigBOZF00000000SAMD00290933
CM1_5m.P93
GCA_019654095.1ContigBPDC00000000SAMD00291034
CM1_200m.P34
GCA_019654375.1ContigBPDQ00000000SAMD00291048
Ct9H_300m.P7
GCA_019653995.1ContigBPCX00000000SAMD00291029
CM1_200m.P29
GCA_019654875.1ContigBPEP00000000SAMD00291073
Ct9H_300m.P32
GCA_019652695.1ContigBPAQ00000000SAMD00290970
CM1_5m.P130
GCA_019653755.1ContigBPCL00000000SAMD00291017
CM1_200m.P17
GCA_019650395.1ContigBOWZ00000000SAMD00290875
CM1_5m.P35
GCA_019650455.1ContigBOXB00000000SAMD00290877
CM1_5m.P37
GCA_019650815.1ContigBOXH00000000SAMD00290883
CM1_5m.P43
GCA_019652935.1ContigBPBC00000000SAMD00290982
Ct9H_90m.P12
GCA_019651915.1ContigBOZG00000000SAMD00290934
CM1_5m.P94
GCA_019652015.1ContigBOZL00000000SAMD00290939
CM1_5m.P99
GCA_019649755.1ContigBOWR00000000SAMD00290867
CM1_5m.P27
GCA_019649275.1ContigBOVV00000000SAMD00290845
CM1_5m.P5
GCA_019653795.1ContigBPCN00000000SAMD00291019
CM1_200m.P19
GCA_019653275.1ContigBPBT00000000SAMD00290999
Ct9H_90m.P29
SRA Data Details
ParameterValue
Data volume, Gbases94
Data volume, Mbytes76268

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