ID 609916 - BioProject

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Accession: PRJNA609916 ID: 609916

Systematic analysis of cross-genus horizontal gene transfer among bacterial pathogens in a single hospital

Multidrug-resistant bacterial pathogens pose a serious public health threat, especially in hospital settings. More...

Accession	PRJNA609916
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Enhanced Detection System for Healthcare-Associated Transmission of Infection" (Grant ID R01 AI127472, National Institute of Allergy and Infectious Diseases Extramural Activities) "Genomic Epidemiology for Hospital Outbreak Detection" (Grant ID R21 AI109459, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 3-Mar-2020 University of Pittsburgh School of Medicine
Related Resources	Project pre-print
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	22
WGS master	21
Genomic DNA	1
Protein Sequences	4785
Other datasets
BioSample	22
Assembly	22

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
21
22

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_012952675.1	JAATIB000000000		SAMN14265976	ACIN00156	Acinetobacter baumannii
GCA_012952645.1	JAATIA000000000		SAMN14265977	CB00017	Citrobacter braakii
GCA_012952665.1	JAATHZ000000000		SAMN14265978	CB00028	Citrobacter freundii
GCA_012952655.1	JAATIE000000000		SAMN14265979	CD07814	Clostridioides difficile
GCA_012952285.1	JAATHK000000000		SAMN14265997	VRE32524	Enterococcus faecium
GCA_012952615.1	JAATHY000000000		SAMN14265980	EC00609	Escherichia coli
GCA_012952605.1	JAATHX000000000		SAMN14265981	EC00668	Escherichia coli
GCA_012952555.1	JAATHW000000000		SAMN14265982	EC00688	Escherichia coli
GCA_012952545.1	JAATHV000000000		SAMN14265983	EC00690	Escherichia coli
GCA_012952535.1	JAATHU000000000		SAMN14265984	EC00701	Escherichia coli
GCA_012952515.1	JAATHT000000000		SAMN14265985	KLP00149	Klebsiella pneumoniae
GCA_012952505.1	JAATID000000000		SAMN14265986	KLP00155	Klebsiella pneumoniae
GCA_012952475.1	JAATHS000000000		SAMN14265987	KLP00161	Klebsiella pneumoniae
GCA_012952335.1	JAATHM000000000		SAMN14265994	KLP00221	Klebsiella pneumoniae
GCA_012952425.1	JAATHR000000000		SAMN14265989	KLP00182	Klebsiella pneumoniae
GCA_012952415.1	JAATHO000000000		SAMN14265992	KLP00215	Klebsiella pneumoniae
GCA_012952405.1	JAATHQ000000000		SAMN14265990	KLP00187	Klebsiella pneumoniae
GCA_012952385.1	JAATHP000000000		SAMN14265991	KLP00213	Klebsiella pneumoniae
GCA_012952365.1	JAATHN000000000		SAMN14265993	KLP00218	Klebsiella pneumoniae
GCA_012952465.1	JAATIC000000000		SAMN14265988	KLP00177	Klebsiella quasipneumoniae
GCA_012952305.1	JAATHL000000000		SAMN14265995	SER00066	Serratia marcescens
GCA_011769885.1		1	SAMN14265996	SER00094	Serratia marcescens

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Systematic analysis of cross-genus horizontal gene transfer among bacterial pathogens in a single hospital

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