Streptococcus pneumoniae (ID 289243) - BioProject

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Accession: PRJNA289243 ID: 289243

Streptococcus pneumoniae

Genomic diversity of nontypeable pneumococcal isolates in South Africa

See Genome Information for Streptococcus pneumoniae

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The aim of this study is to investigate the epidemiology, molecular structure and genomic diversity of nontypeable pneumococcal isolates in South Africa.

Accession	PRJNA289243
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Streptococcus pneumoniae[Taxonomy ID: 1313] Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
Submission	Registration date: 7-Mar-2016 National Institute for Communicable Diseases
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	41347
WGS master	171
Protein Sequences	351977
Other datasets
BioSample	174
Assembly	171

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

170
1
171

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002866105.1	LTCO00000000	SAMN04495457	NTPn 152	Streptococcus pneumoniae
GCA_002866085.1	LTCH00000000	SAMN04495422	NTPn 94	Streptococcus pneumoniae
GCA_002866205.1	LTCG00000000	SAMN04495419	NTPn 90	Streptococcus pneumoniae
GCA_002866145.1	LTCF00000000	SAMN04495415	NTPn 85	Streptococcus pneumoniae
GCA_002866165.1	LTCP00000000	SAMN04495459	NTPn 154	Streptococcus pneumoniae
GCA_002866135.1	LTCQ00000000	SAMN04495462	NTPn 158	Streptococcus pneumoniae
GCA_002866325.1	LTCM00000000	SAMN04495448	NTPn 130	Streptococcus pneumoniae
GCA_002866305.1	LTCL00000000	SAMN04495443	NTPn 124	Streptococcus pneumoniae
GCA_002866265.1	LTCK00000000	SAMN04495440	NTPn 119	Streptococcus pneumoniae
GCA_002866255.1	LTCJ00000000	SAMN04495439	NTPn 117	Streptococcus pneumoniae
GCA_002866245.1	LTCI00000000	SAMN04495426	NTPn 101	Streptococcus pneumoniae
GCA_002866465.1	LTCU00000000	SAMN04495509	NTPn 231	Streptococcus pneumoniae
GCA_002866445.1	LTCT00000000	SAMN04495506	NTPn 228	Streptococcus pneumoniae
GCA_002866425.1	LTCV00000000	SAMN04495516	NTPn 239	Streptococcus pneumoniae
GCA_002866405.1	LTCW00000000	SAMN04495478	NTPn 183	Streptococcus pneumoniae
GCA_002866375.1	LTCS00000000	SAMN04495492	NTPn 203	Streptococcus pneumoniae
GCA_002866355.1	LTCR00000000	SAMN04495476	NTPn 181	Streptococcus pneumoniae
GCA_007785565.1	VMVG00000000	SAMN04495484	NTPn 191	Streptococcus pneumoniae
GCA_007785595.1	VMUL00000000	SAMN04495510	NTPn 232	Streptococcus pneumoniae
GCA_007785485.1	VMUR00000000	SAMN04495502	NTPn 220	Streptococcus pneumoniae
GCA_007785555.1	VMUH00000000	SAMN04495514	NTPn 237	Streptococcus pneumoniae
GCA_007785005.1	VMVB00000000	SAMN04495490	NTPn 201	Streptococcus pneumoniae
GCA_007785155.1	VMUP00000000	SAMN04495504	NTPn 223	Streptococcus pneumoniae
GCA_007785035.1	VMVD00000000	SAMN04495487	NTPn 195	Streptococcus pneumoniae
GCA_007785135.1	VMVP00000000	SAMN04495471	NTPn 171	Streptococcus pneumoniae
GCA_007785115.1	VMVK00000000	SAMN04495480	NTPn 185	Streptococcus pneumoniae
GCA_007785045.1	VMVH00000000	SAMN04495483	NTPn 189	Streptococcus pneumoniae
GCA_007785095.1	VMVS00000000	SAMN04495467	NTPn 165	Streptococcus pneumoniae
GCA_007785015.1	VMVL00000000	SAMN04495477	NTPn 182	Streptococcus pneumoniae
GCA_007785025.1	VMUX00000000	SAMN04495496	NTPn 207	Streptococcus pneumoniae
GCA_007784935.1	VMVT00000000	SAMN04495466	NTPn 163	Streptococcus pneumoniae
GCA_007784895.1	VMVM00000000	SAMN04495474	NTPn 177	Streptococcus pneumoniae
GCA_007784945.1	VMVF00000000	SAMN04495485	NTPn 192	Streptococcus pneumoniae
GCA_007784875.1	VMUS00000000	SAMN04495501	NTPn 215	Streptococcus pneumoniae
GCA_007784915.1	VMUW00000000	SAMN04495497	NTPn 210	Streptococcus pneumoniae
GCA_007784785.1	VMUV00000000	SAMN04495498	NTPn 211	Streptococcus pneumoniae
GCA_007784925.1	VMVI00000000	SAMN04495482	NTPn 188	Streptococcus pneumoniae
GCA_007784865.1	VMVR00000000	SAMN04495468	NTPn 166	Streptococcus pneumoniae
GCA_007784825.1	VMUO00000000	SAMN04495505	NTPn 226	Streptococcus pneumoniae
GCA_007784815.1	VMVQ00000000	SAMN04495470	NTPn 170	Streptococcus pneumoniae
GCA_007784775.1	VMUB00000000	SAMN04495521	NTPn 251	Streptococcus pneumoniae
GCA_007785315.1	VMUJ00000000	SAMN04495512	NTPn 234	Streptococcus pneumoniae
GCA_007785275.1	VMVE00000000	SAMN04495486	NTPn 194	Streptococcus pneumoniae
GCA_007785265.1	VMVJ00000000	SAMN04495481	NTPn 187	Streptococcus pneumoniae
GCA_007785325.1	VMUZ00000000	SAMN04495493	NTPn 204	Streptococcus pneumoniae
GCA_007785335.1	VMUG00000000	SAMN04495515	NTPn 238	Streptococcus pneumoniae
GCA_007785515.1	VMVU00000000	SAMN04495465	NTPn 162	Streptococcus pneumoniae
GCA_007785495.1	VMUY00000000	SAMN04495495	NTPn 206	Streptococcus pneumoniae
GCA_007785395.1	VMUT00000000	SAMN04495500	NTPn 214	Streptococcus pneumoniae
GCA_007785475.1	VMVN00000000	SAMN04495473	NTPn 175	Streptococcus pneumoniae
GCA_007785405.1	VMUF00000000	SAMN04495517	NTPn 240	Streptococcus pneumoniae
GCA_007785355.1	VMUE00000000	SAMN04495518	NTPn 241	Streptococcus pneumoniae
GCA_007785415.1	VMUU00000000	SAMN04495499	NTPn 212	Streptococcus pneumoniae
GCA_007785425.1	VMUA00000000	SAMN04495522	NTPn 254	Streptococcus pneumoniae
GCA_007785235.1	VMTZ00000000	SAMN04495523	NTPn 256	Streptococcus pneumoniae
GCA_007785245.1	VMUM00000000	SAMN04495508	NTPn 230	Streptococcus pneumoniae
GCA_007785215.1	VMUI00000000	SAMN04495513	NTPn 235	Streptococcus pneumoniae
GCA_007785165.1	VMVA00000000	SAMN04495491	NTPn 202	Streptococcus pneumoniae
GCA_007784765.1	VMUK00000000	SAMN04495511	NTPn 233	Streptococcus pneumoniae
GCA_007784695.1	VMUQ00000000	SAMN04495503	NTPn 222	Streptococcus pneumoniae
GCA_007784685.1	VMVO00000000	SAMN04495472	NTPn 172	Streptococcus pneumoniae
GCA_007784705.1	VMVC00000000	SAMN04495488	NTPn 196	Streptococcus pneumoniae
GCA_007784675.1	VMUD00000000	SAMN04495519	NTPn 242	Streptococcus pneumoniae
GCA_007784665.1	VMUN00000000	SAMN04495507	NTPn 229	Streptococcus pneumoniae
GCA_007787585.1	VMYC00000000	SAMN04495396	NTPn 59	Streptococcus pneumoniae
GCA_007787515.1	VMWH00000000	SAMN04495445	NTPn 126	Streptococcus pneumoniae
GCA_007787715.1	VMYA00000000	SAMN04495525	NTPn 263-2	Streptococcus pneumoniae
GCA_007787535.1	VMWD00000000	SAMN04495452	NTPn 139	Streptococcus pneumoniae
GCA_007787665.1	VMXZ00000000	SAMN04495389	NTPn 52	Streptococcus pneumoniae
GCA_007787725.1	VMYB00000000	SAMN04495524	NTPn 259	Streptococcus pneumoniae
GCA_007787645.1	VMXL00000000	SAMN04495406	NTPn 70	Streptococcus pneumoniae
GCA_007787655.1	VMXX00000000	SAMN04495392	NTPn 55	Streptococcus pneumoniae
GCA_007787575.1	VMWU00000000	SAMN04495428	NTPn 103	Streptococcus pneumoniae
GCA_007787625.1	VMXP00000000	SAMN04495402	NTPn 66	Streptococcus pneumoniae
GCA_007787455.1	VMWP00000000	SAMN04495433	NTPn 111	Streptococcus pneumoniae
GCA_007787545.1	VMXC00000000	SAMN04495417	NTPn 88	Streptococcus pneumoniae
GCA_007787525.1	VMWA00000000	SAMN04495455	NTPn 147	Streptococcus pneumoniae
GCA_007787475.1	VMXV00000000	SAMN04495394	NTPn 57	Streptococcus pneumoniae
GCA_007787445.1	VMXW00000000	SAMN04495393	NTPn 56	Streptococcus pneumoniae
GCA_007787435.1	VMXD00000000	SAMN04495416	NTPn 87	Streptococcus pneumoniae
GCA_007787365.1	VMWE00000000	SAMN04495450	NTPn 135	Streptococcus pneumoniae
GCA_007787395.1	VMXY00000000	SAMN04495390	NTPn 53	Streptococcus pneumoniae
GCA_007787375.1	VMVY00000000	SAMN04495460	NTPn 155	Streptococcus pneumoniae
GCA_007787355.1	VMXH00000000	SAMN04495410	NTPn 75	Streptococcus pneumoniae
GCA_007787285.1	VMWM00000000	SAMN04495436	NTPn 114	Streptococcus pneumoniae
GCA_007787155.1	VMWJ00000000	SAMN04495442	NTPn 121	Streptococcus pneumoniae
GCA_007787035.1	VMWR00000000	SAMN04495431	NTPn 109	Streptococcus pneumoniae
GCA_007787335.1	VMWK00000000	SAMN04495441	NTPn 120	Streptococcus pneumoniae
GCA_007787185.1	VMXS00000000	SAMN04495399	NTPn 63	Streptococcus pneumoniae
GCA_007787275.1	VMXU00000000	SAMN04495395	NTPn 58	Streptococcus pneumoniae
GCA_007787245.1	VMWV00000000	SAMN04495427	NTPn 102	Streptococcus pneumoniae
GCA_007787205.1	VMXK00000000	SAMN04495407	NTPn 71	Streptococcus pneumoniae
GCA_007787295.1	VMWF00000000	SAMN04495449	NTPn 134	Streptococcus pneumoniae
GCA_007787145.1	VMWB00000000	SAMN04495454	NTPn 146	Streptococcus pneumoniae
GCA_007787135.1	VMWX00000000	SAMN04495424	NTPn 97	Streptococcus pneumoniae
GCA_007787215.1	VMXQ00000000	SAMN04495401	NTPn 65	Streptococcus pneumoniae
GCA_007786975.1	VMVZ00000000	SAMN04495458	NTPn 153	Streptococcus pneumoniae
GCA_007787115.1	VMXB00000000	SAMN04495418	NTPn 89	Streptococcus pneumoniae
GCA_007787075.1	VMWG00000000	SAMN04495446	NTPn 127	Streptococcus pneumoniae
GCA_007787045.1	VMWS00000000	SAMN04495430	NTPn 106	Streptococcus pneumoniae
GCA_007787055.1	VMXR00000000	SAMN04495400	NTPn 64	Streptococcus pneumoniae
GCA_007786875.1	VMXA00000000	SAMN04495420	NTPn 92	Streptococcus pneumoniae
GCA_007787005.1	VMXG00000000	SAMN04495411	NTPn 76	Streptococcus pneumoniae
GCA_007786905.1	VMVV00000000	SAMN04495464	NTPn 161	Streptococcus pneumoniae
GCA_007786965.1	VMWQ00000000	SAMN04495432	NTPn 110	Streptococcus pneumoniae
GCA_007786845.1	VMXE00000000	SAMN04495414	NTPn 84	Streptococcus pneumoniae
GCA_007786955.1	VMWC00000000	SAMN04495453	NTPn 140	Streptococcus pneumoniae
GCA_007786775.1	VMWW00000000	SAMN04495425	NTPn 100	Streptococcus pneumoniae
GCA_007786865.1	VMXO00000000	SAMN04495403	NTPn 67	Streptococcus pneumoniae
GCA_007786925.1	VMXJ00000000	SAMN04495408	NTPn 72	Streptococcus pneumoniae
GCA_007786835.1	VMXN00000000	SAMN04495404	NTPn 68	Streptococcus pneumoniae
GCA_007786685.1	VMWN00000000	SAMN04495435	NTPn 113	Streptococcus pneumoniae
GCA_007786805.1	VMWO00000000	SAMN04495434	NTPn 112	Streptococcus pneumoniae
GCA_007786755.1	VMVW00000000	SAMN04495463	NTPn 159	Streptococcus pneumoniae
GCA_007786765.1	VMWZ00000000	SAMN04495421	NTPn 93	Streptococcus pneumoniae
GCA_007786715.1	VMXI00000000	SAMN04495409	NTPn 73	Streptococcus pneumoniae
GCA_007786615.1	VMWL00000000	SAMN04495438	NTPn 116	Streptococcus pneumoniae
GCA_007786675.1	VMXT00000000	SAMN04495397	NTPn 60	Streptococcus pneumoniae
GCA_007786695.1	VMWY00000000	SAMN04495423	NTPn 95	Streptococcus pneumoniae
GCA_007786645.1	VMXF00000000	SAMN04495412	NTPn 79	Streptococcus pneumoniae
GCA_007786605.1	VMWI00000000	SAMN04495444	NTPn 125	Streptococcus pneumoniae
GCA_007786565.1	VMWT00000000	SAMN04495429	NTPn 104	Streptococcus pneumoniae
GCA_007786585.1	VMVX00000000	SAMN04495461	NTPn 156	Streptococcus pneumoniae
GCA_007786525.1	VMXM00000000	SAMN04495405	NTPn 69	Streptococcus pneumoniae
GCA_001581145.1	LJVJ00000000	SAMN03964619	NTPn 1	Streptococcus pneumoniae
GCA_001581155.1	LJVK00000000	SAMN03964650	NTPn 45	Streptococcus pneumoniae
GCA_001581135.1	LJVL00000000	SAMN03964620	NTPn 2	Streptococcus pneumoniae
GCA_001581455.1	LJWB00000000	SAMN03964636	NTPn 28	Streptococcus pneumoniae
GCA_001581425.1	LJWA00000000	SAMN03964634	NTPn 20	Streptococcus pneumoniae
GCA_001581485.1	LJVS00000000	SAMN03964626	NTPn 11	Streptococcus pneumoniae
GCA_001581475.1	LJVQ00000000	SAMN03964624	NTPn 6	Streptococcus pneumoniae
GCA_001581375.1	LJVX00000000	SAMN03964631	NTPn 16	Streptococcus pneumoniae
GCA_001581355.1	LJVW00000000	SAMN03964630	NTPn 15	Streptococcus pneumoniae
GCA_001581405.1	LJVZ00000000	SAMN03964633	NTPn 18	Streptococcus pneumoniae
GCA_001581395.1	LJVY00000000	SAMN03964632	NTPn 17	Streptococcus pneumoniae
GCA_001581215.1	LJVN00000000	SAMN03964621	NTPn 3	Streptococcus pneumoniae
GCA_001581165.1	LJVM00000000	SAMN03964635	NTPn 27	Streptococcus pneumoniae
GCA_001581245.1	LJVP00000000	SAMN03964623	NTPn 5	Streptococcus pneumoniae
GCA_001581235.1	LJVO00000000	SAMN03964622	NTPn 4	Streptococcus pneumoniae
GCA_001581295.1	LJVT00000000	SAMN03964627	NTPn 12	Streptococcus pneumoniae
GCA_001581275.1	LJVR00000000	SAMN03964625	NTPn 10	Streptococcus pneumoniae
GCA_001581325.1	LJVV00000000	SAMN03964629	NTPn 14	Streptococcus pneumoniae
GCA_001581305.1	LJVU00000000	SAMN03964628	NTPn 13	Streptococcus pneumoniae
GCA_001581855.1	LJWS00000000	SAMN03964654	NTPn 49	Streptococcus pneumoniae
GCA_001581805.1	LJWN00000000	SAMN03964648	NTPn 43	Streptococcus pneumoniae
GCA_001581825.1	LJWI00000000	SAMN03964643	NTPn 36	Streptococcus pneumoniae
GCA_001581795.1	LJWG00000000	SAMN03964642	NTPn 34	Streptococcus pneumoniae
GCA_001581775.1	LJWT00000000	SAMN03964655	NTPn 50	Streptococcus pneumoniae
GCA_001581745.1	LJWR00000000	SAMN03964653	NTPn 48	Streptococcus pneumoniae
GCA_001581695.1	LJWO00000000	SAMN03964649	NTPn 44	Streptococcus pneumoniae
GCA_001581665.1	LJWM00000000	SAMN03964647	NTPn 42	Streptococcus pneumoniae
GCA_001581735.1	LJWQ00000000	SAMN03964652	NTPn 47	Streptococcus pneumoniae
GCA_001581715.1	LJWP00000000	SAMN03964651	NTPn 46	Streptococcus pneumoniae
GCA_001581535.1	LJWD00000000	SAMN03964638	NTPn 30	Streptococcus pneumoniae
GCA_001581515.1	LJWC00000000	SAMN03964637	NTPn 29	Streptococcus pneumoniae
GCA_001581555.1	LJWF00000000	SAMN03964640	NTPn 32	Streptococcus pneumoniae
GCA_001581545.1	LJWE00000000	SAMN03964639	NTPn 31	Streptococcus pneumoniae
GCA_001581615.1	LJWJ00000000	SAMN03964644	NTPn 38	Streptococcus pneumoniae
GCA_001581585.1	LJWH00000000	SAMN03964641	NTPn 33	Streptococcus pneumoniae
GCA_001581645.1	LJWL00000000	SAMN03964646	NTPn 40	Streptococcus pneumoniae
GCA_001581635.1	LJWK00000000	SAMN03964645	NTPn 39	Streptococcus pneumoniae
GCA_008039075.1	VRYS00000000	SAMN04495475	NTPn 178	Streptococcus pneumoniae
GCA_008039055.1	VRYQ00000000	SAMN04495494	NTPn 205	Streptococcus pneumoniae
GCA_008039015.1	VRYR00000000	SAMN04495489	NTPn 200	Streptococcus pneumoniae
GCA_008039135.1	VRYW00000000	SAMN04495398	NTPn 62	Streptococcus pneumoniae
GCA_008039035.1	VRYT00000000	SAMN04495469	NTPn 168	Streptococcus pneumoniae
GCA_008039095.1	VRYU00000000	SAMN04495456	NTPn 151	Streptococcus pneumoniae
GCA_008039115.1	VRYV00000000	SAMN04495447	NTPn 129	Streptococcus pneumoniae
GCA_008039165.1	VRYX00000000	SAMN04495391	NTPn 54	Streptococcus pneumoniae
GCA_007844935.1	VMUC00000000	SAMN04495520	NTPn 244	Streptococcus pneumoniae
GCA_002866345.1	LTCN00000000	SAMN04495451	NTPn 138	Streptococcus pseudopneumoniae

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Streptococcus pneumoniae

Genomic diversity of nontypeable pneumococcal isolates in South Africa

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