freshwater sediment metagenome (ID 427763) - BioProject

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Accession: PRJNA427763 ID: 427763

freshwater sediment metagenome

Metabolic profiles of microbial communities from surface sediment in the Pearl river

Comparative metabolic profiles of microbial communities from surface sediment in the Pearl river

Accession	PRJNA427763
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater sediment metagenome[Taxonomy ID: 556182] unclassified sequences; metagenomes; ecological metagenomes; freshwater sediment metagenome
Publications	Zhang S et al., "Metagenomic analysis exhibited the co-metabolism of polycyclic aromatic hydrocarbons by bacterial community from estuarine sediment.", Environ Int, 2019 Aug;129:308-319
Submission	Registration date: 10-Jun-2019 Shantou University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	18128
WGS master	56
SRA Experiments	56
Protein Sequences	154920
Publications
PubMed	1
Other datasets
BioSample	112
Assembly	56

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

56
56

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_006227875.1	SBFI00000000	SAMN10716076	M0029	Acidobacteriota bacterium
GCA_006226465.1	SBHJ00000000	SAMN10716129	M3015	Alphaproteobacteria bacterium
GCA_006226495.1	SBGU00000000	SAMN10716114	M2405	Alphaproteobacteria bacterium
GCA_006226305.1	SBHG00000000	SAMN10716126	M3011	Alphaproteobacteria bacterium
GCA_006226415.1	SBGZ00000000	SAMN10716119	M2410	Alphaproteobacteria bacterium
GCA_006226265.1	SBHH00000000	SAMN10716127	M3012	Alphaproteobacteria bacterium
GCA_006226225.1	SBHI00000000	SAMN10716128	M3014	Alphaproteobacteria bacterium
GCA_006226985.1	SBGC00000000	SAMN10716096	M0117	Bacillota bacterium
GCA_006226325.1	SBHF00000000	SAMN10716125	M3009	Bacteroidota bacterium
GCA_006227105.1	SBFR00000000	SAMN10716085	M0103	Bacteroidota bacterium
GCA_006227095.1	SBFZ00000000	SAMN10716093	M0113	Bacteroidota bacterium
GCA_006226805.1	SBFW00000000	SAMN10716090	M0109	Bacteroidota bacterium
GCA_006226795.1	SBGA00000000	SAMN10716094	M0115	Bacteroidota bacterium
GCA_006226695.1	SBGH00000000	SAMN10716101	M0607	Bacteroidota bacterium
GCA_006226555.1	SBGS00000000	SAMN10716112	M1807	Bacteroidota bacterium
GCA_006226545.1	SBGR00000000	SAMN10716111	M1806	Bacteroidota bacterium
GCA_006226425.1	SBGX00000000	SAMN10716117	M2408	Bacteroidota bacterium
GCA_006226345.1	SBHD00000000	SAMN10716123	M3007	Bacteroidota bacterium
GCA_006227965.1	SBFL00000000	SAMN10716079	M0035	Bacteroidota bacterium
GCA_006227785.1	SBFU00000000	SAMN10716088	M0107	Burkholderiales bacterium
GCA_006227825.1	SBFS00000000	SAMN10716086	M0105	Burkholderiales bacterium
GCA_006227115.1	SBFQ00000000	SAMN10716084	M0058	Campylobacterota bacterium
GCA_006226785.1	SBFX00000000	SAMN10716091	M0110	Cytophagales bacterium
GCA_006226975.1	SBGL00000000	SAMN10716105	M1202	Deltaproteobacteria bacterium
GCA_006226595.1	SBGP00000000	SAMN10716109	M1803	Deltaproteobacteria bacterium
GCA_006226755.1	SBGE00000000	SAMN10716098	M0603	Deltaproteobacteria bacterium
GCA_006226565.1	SBGO00000000	SAMN10716108	M1802	Deltaproteobacteria bacterium
GCA_006226895.1	SBFN00000000	SAMN10716081	M0040	Deltaproteobacteria bacterium
GCA_006226375.1	SBHC00000000	SAMN10716122	M3003	Deltaproteobacteria bacterium
GCA_006227955.1	SBFM00000000	SAMN10716080	M0039	Deltaproteobacteria bacterium
GCA_006227945.1	SBFG00000000	SAMN10716074	M0026	Gammaproteobacteria bacterium
GCA_006227845.1	SBFK00000000	SAMN10716078	M0031	Gammaproteobacteria bacterium
GCA_006227885.1	SBFJ00000000	SAMN10716077	M0030	Gammaproteobacteria bacterium
GCA_006227775.1	SBFV00000000	SAMN10716089	M0108	Gammaproteobacteria bacterium
GCA_006227905.1	SBFH00000000	SAMN10716075	M0027	Gammaproteobacteria bacterium
GCA_006226625.1	SBGN00000000	SAMN10716107	M1205	Gammaproteobacteria bacterium
GCA_006226575.1	SBGY00000000	SAMN10716118	M2409	Gammaproteobacteria bacterium
GCA_006227015.1	SBGI00000000	SAMN10716102	M0608	Gammaproteobacteria bacterium
GCA_006227085.1	SBFY00000000	SAMN10716092	M0112	Gammaproteobacteria bacterium
GCA_006226995.1	SBGJ00000000	SAMN10716103	M0609	Gammaproteobacteria bacterium
GCA_006226915.1	SBGT00000000	SAMN10716113	M1809	Gammaproteobacteria bacterium
GCA_006227045.1	SBGB00000000	SAMN10716095	M0116	Gammaproteobacteria bacterium
GCA_006226925.1	SBGW00000000	SAMN10716116	M2407	Paracoccaceae bacterium
GCA_006226775.1	SBGD00000000	SAMN10716097	M0601	Paracoccaceae bacterium
GCA_006226715.1	SBGF00000000	SAMN10716099	M0604	Paracoccaceae bacterium
GCA_006226505.1	SBGV00000000	SAMN10716115	M2406	Paracoccaceae bacterium
GCA_006227805.1	SBFT00000000	SAMN10716087	M0106	Paracoccaceae bacterium
GCA_006226655.1	SBGM00000000	SAMN10716106	M1203	Pseudomonadales bacterium
GCA_006226685.1	SBGG00000000	SAMN10716100	M0605	Sphingomonadales bacterium
GCA_006226385.1	SBHA00000000	SAMN10716120	M2411	Sphingomonadales bacterium
GCA_006226295.1	SBHE00000000	SAMN10716124	M3008	Sphingomonadales bacterium
GCA_006226665.1	SBGK00000000	SAMN10716104	M1201	Vibrionaceae bacterium
GCA_006226855.1	SBFP00000000	SAMN10716083	M0043	bacterium
GCA_006226875.1	SBFO00000000	SAMN10716082	M0041	bacterium
GCA_006226475.1	SBHB00000000	SAMN10716121	M2413	bacterium
GCA_006226965.1	SBGQ00000000	SAMN10716110	M1805	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	113
Data volume, Mbytes	48458

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freshwater sediment metagenome

Metabolic profiles of microbial communities from surface sediment in the Pearl river

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