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Links from Protein

Accession: PRJNA420036 ID: 420036

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
Anitimicrobial resistant E. coli isolated from cattle and farm environments
AccessionPRJNA420036
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 5-Dec-2017
University of Florida
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)32083
WGS master118
Protein Sequences579053
Other datasets
BioSample118
Assembly118
Assembly details:
Assembly levelNumber of Assemblies
5
113
118
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003340795.1ContigQPME00000000SAMN08141566
KCJK7709
GCA_003340735.1ContigQPLZ00000000SAMN08140601
KCJK6782
GCA_003340745.1ContigQPMB00000000SAMN08140746
KCJK6950
GCA_003340715.1ContigQPMA00000000SAMN08140620
KCJK6936
GCA_003340725.1ContigQPMF00000000SAMN08141568
KCJK6594
GCA_003340655.1ContigQPMC00000000SAMN08141011
KCJK7252
GCA_003340665.1ContigQPLY00000000SAMN08140391
KCJK6707
GCA_003340675.1ContigQPMD00000000SAMN08141565
KCJK7314
GCA_002837475.1ContigPJCW00000000SAMN08140186
KCJK6623
GCA_002837435.1ContigPJCZ00000000SAMN08140465
KCJK6756
GCA_002837455.1ContigPJDB00000000SAMN08140602
KCJK6898
GCA_002837365.1ContigPJDH00000000SAMN08141034
KCJK7254
GCA_002837355.1ContigPJDE00000000SAMN08140745
KCJK6947
GCA_002837335.1ContigPJDG00000000SAMN08140749
KCJK7211
GCA_002837305.1ContigPJDD00000000SAMN08140730
KCJK6944
GCA_002837295.1ContigPJDF00000000SAMN08140747
KCJK7063
GCA_002837545.1ContigPJCX00000000SAMN08140410
KCJK6715
GCA_002837555.1ContigPJCY00000000SAMN08140415
KCJK6734
GCA_002837535.1ContigPJDA00000000SAMN08140559
KCJK6764
GCA_002837515.1ContigPJDC00000000SAMN08140615
KCJK6919
GCA_002844415.1ContigPIUO00000000SAMN08118892
KCJK6411
GCA_002844475.1ContigPIUP00000000SAMN08118916
KCJK6423
GCA_002835165.1ContigPIVC00000000SAMN08120299
KCJK6541
GCA_002835175.1ContigPIVE00000000SAMN08120301
KCJK6613
GCA_002835135.1ContigPIUY00000000SAMN08120134
KCJK6515
GCA_002835125.1ContigPIUX00000000SAMN08118931
KCJK6501
GCA_002835085.1ContigPIUS00000000SAMN08118920
KCJK6438
GCA_002835095.1ContigPIUW00000000SAMN08118926
KCJK6464
GCA_002835065.1ContigPIUR00000000SAMN08118918
KCJK6434
GCA_002834515.1ContigPIVB00000000SAMN08120282
KCJK6537
GCA_002834495.1ContigPIVA00000000SAMN08120281
KCJK6528
GCA_002834485.1ContigPIVD00000000SAMN08120300
KCJK6605
GCA_002834445.1ContigPIUZ00000000SAMN08120280
KCJK6524
GCA_002834425.1ContigPIUU00000000SAMN08118924
KCJK6449
GCA_002834415.1ContigPIUV00000000SAMN08118925
KCJK6454
GCA_002834405.1ContigPIUT00000000SAMN08118923
KCJK6447
GCA_002810955.1ContigPIPD00000000SAMN08104698
KCJK6400
GCA_002810885.1ContigPIOX00000000SAMN08104586
KCJK6365
GCA_002810905.1ContigPIPC00000000SAMN08104689
KCJK6392
GCA_002810875.1ContigPIPE00000000SAMN08104775
KCJK6405
GCA_002810895.1ContigPIOZ00000000SAMN08104590
KCJK6388
GCA_002810845.1ContigPIPA00000000SAMN08104595
KCJK6389
GCA_002810835.1ContigPIPB00000000SAMN08104646
KCJK6390
GCA_002810785.1ContigPIOY00000000SAMN08104589
KCJK6378
GCA_002810765.1ContigPIOV00000000SAMN08104584
KCJK6351
GCA_002810775.1ContigPIOU00000000SAMN08104573
KCJK6320
GCA_002810755.1ContigPIOW00000000SAMN08104585
KCJK6357
GCA_002810735.1ContigPIOR00000000SAMN08104570
KCJK6265
GCA_002810705.1ContigPIOS00000000SAMN08104571
KCJK6272
GCA_002810695.1ContigPIOQ00000000SAMN08104569
KCJK6238
GCA_002810665.1ContigPIOP00000000SAMN08104218
KCJK6199
GCA_002810655.1ContigPIOT00000000SAMN08104572
KCJK6317
GCA_002834355.1ContigPIUQ00000000SAMN08118917
KCJK6431
GCA_004793375.1ScaffoldSRWV00000000SAMN11334561
KCJK8392
GCA_004793325.1ContigSRVT00000000SAMN11334533
KCJK8061
GCA_004793335.1ContigSRWU00000000SAMN11334560
KCJK8373
GCA_004793215.1ContigSRVY00000000SAMN11334538
KCJK8081
GCA_004793315.1ContigSRVU00000000SAMN11334534
KCJK8062
GCA_004792745.1ContigSRWE00000000SAMN11334544
KCJK8160
GCA_004768185.1ContigSROC00000000SAMN11334876
KCJK7684
GCA_004768325.1ContigSROS00000000SAMN11334860
KCJK7150
GCA_004767325.1ContigSROJ00000000SAMN11334869
KCJK7052
GCA_004767405.1ContigSROO00000000SAMN11334864
KCJK7195
GCA_004768205.1ContigSROU00000000SAMN11334858
KCJK7142
GCA_004768315.1ContigSRNU00000000SAMN11334884
KCJK7719
GCA_004768155.1ContigSROF00000000SAMN11334873
KCJK6780
GCA_004768235.1ContigSROT00000000SAMN11334859
KCJK7146
GCA_004768215.1ContigSRNS00000000SAMN11334886
KCJK6920
GCA_004768085.1ContigSRNV00000000SAMN11334883
KCJK7715
GCA_004768075.1ContigSROD00000000SAMN11334875
KCJK7675
GCA_004768035.1ContigSROP00000000SAMN11334863
KCJK7187
GCA_004768165.1ContigSROH00000000SAMN11334871
KCJK7298
GCA_004767885.1ContigSRNY00000000SAMN11334880
KCJK7708
GCA_004768055.1ContigSROA00000000SAMN11334878
KCJK7704
GCA_004767665.1ContigSROI00000000SAMN11334870
KCJK6269
GCA_004768145.1ContigSROG00000000SAMN11334872
KCJK7301
GCA_004768005.1ContigSROR00000000SAMN11334861
KCJK7162
GCA_004767915.1ContigSROV00000000SAMN11334857
KCJK7121
GCA_004767785.1ContigSRNT00000000SAMN11334885
KCJK6915
GCA_004767715.1ContigSROW00000000SAMN11334856
KCJK7105
GCA_004767655.1ContigSRNW00000000SAMN11334882
KCJK7713
GCA_004767775.1ContigSRNZ00000000SAMN11334879
KCJK7706
GCA_004767805.1ContigSRNX00000000SAMN11334881
KCJK7710
GCA_004767725.1ContigSRON00000000SAMN11334865
KCJK7020
GCA_004767705.1ContigSROQ00000000SAMN11334862
KCJK7164
GCA_004767295.1ContigSROL00000000SAMN11334867
KCJK7033
GCA_004793385.1ScaffoldSRVS00000000SAMN11334532
KCJK8059
GCA_004793355.1ContigSRWG00000000SAMN11334546
KCJK8192
GCA_004793235.1ScaffoldSRVZ00000000SAMN11334539
KCJK8103
GCA_004793245.1ContigSRVV00000000SAMN11334535
KCJK8065
GCA_004793105.1ContigSRWD00000000SAMN11334543
KCJK8128
GCA_004793255.1ContigSRVW00000000SAMN11334536
KCJK8071
GCA_004793095.1ContigSRWM00000000SAMN11334552
KCJK8295
GCA_004793225.1ContigSRVX00000000SAMN11334537
KCJK8074
GCA_004793175.1ContigSRWA00000000SAMN11334540
KCJK8104
GCA_004793145.1ContigSRWB00000000SAMN11334541
KCJK8108
GCA_004793115.1ContigSRWC00000000SAMN11334542
KCJK8124
GCA_004793075.1ContigSRWN00000000SAMN11334553
KCJK8315
GCA_004793065.1ContigSRWO00000000SAMN11334554
KCJK8325
GCA_004793005.1ContigSRWQ00000000SAMN11334556
KCJK8342
GCA_004792995.1ContigSRWX00000000SAMN11334563
KCJK8399
GCA_004792985.1ContigSRWR00000000SAMN11334557
KCJK8348
GCA_004792865.1ContigSRWL00000000SAMN11334551
KCJK8229
GCA_004792965.1ScaffoldSRWW00000000SAMN11334562
KCJK8397
GCA_004793025.1ContigSRWP00000000SAMN11334555
KCJK8338
GCA_004792925.1ContigSRWY00000000SAMN11334564
KCJK8354
GCA_004792825.1ContigSRWF00000000SAMN11334545
KCJK8170
GCA_004792895.1ScaffoldSRVR00000000SAMN11334531
KCJK8056
GCA_004792905.1ContigSRWK00000000SAMN11334550
KCJK8198
GCA_004792775.1ContigSRWT00000000SAMN11334559
KCJK8357
GCA_004792855.1ContigSRWH00000000SAMN11334547
KCJK8194
GCA_004792835.1ContigSRWS00000000SAMN11334558
KCJK8356
GCA_004792755.1ContigSRWJ00000000SAMN11334549
KCJK8197
GCA_004792765.1ContigSRWI00000000SAMN11334548
KCJK8195
GCA_004768295.1ContigSROE00000000SAMN11334874
KCJK7003
GCA_004768245.1ContigSROB00000000SAMN11334877
KCJK7695
GCA_004768285.1ContigSROK00000000SAMN11334868
KCJK7048
GCA_004768045.1ContigSROM00000000SAMN11334866
KCJK7027

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