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Accession: PRJDB4868 ID: 329091

Whole-genome sequencing of multidrug-resistant Escherichia coli

See Genome Information for Escherichia coli
Sixty-four clinical isolates of multidrug-resistant Escherichia coli in community hospitals were collected and analyzed by whole-genome sequencing.
AccessionPRJDB4868
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsKanamori H et al., "Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains.", Antimicrob Agents Chemother, 2017 Aug;61(8)
SubmissionRegistration date: 13-Jul-2016
Medicine / Division of Infectious Diseases, University of North Carolina
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5485
WGS master64
SRA Experiments64
Protein Sequences316666
Publications
PubMed1
PMC1
Other datasets
BioSample64
Assembly64
Assembly details:
Assembly levelNumber of Assemblies
9
55
64
AssemblyLevelWGSBioSampleStrainTaxonomy
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003731595.1ScaffoldMCLQ00000000SAMD00052686
HE-MDREc67
GCA_003731605.1ContigMCLR00000000SAMD00052687
HE-MDREc68
GCA_003731575.1ContigMCLT00000000SAMD00052689
HE-MDREc71
GCA_003731555.1ContigMCLS00000000SAMD00052688
HE-MDREc70
GCA_003731535.1ScaffoldMCLP00000000SAMD00052685
HE-MDREc66
GCA_003731515.1ScaffoldMCLM00000000SAMD00052682
HE-MDREc63
GCA_003731485.1ContigMCLO00000000SAMD00052684
HE-MDREc65
GCA_003731475.1ContigMCLN00000000SAMD00052683
HE-MDREc64
GCA_003731455.1ContigMCLK00000000SAMD00052680
HE-MDREc61
GCA_003731435.1ContigMCLJ00000000SAMD00052679
HE-MDREc60
GCA_003731415.1ContigMCLL00000000SAMD00052681
HE-MDREc62
GCA_003731375.1ContigMCLI00000000SAMD00052678
HE-MDREc59
GCA_003731355.1ContigMCLH00000000SAMD00052677
HE-MDREc58
GCA_003731365.1ScaffoldMCLG00000000SAMD00052676
HE-MDREc57
GCA_003731335.1ContigMCLF00000000SAMD00052675
HE-MDREc55
GCA_003731315.1ContigMCLE00000000SAMD00052674
HE-MDREc54
GCA_003731295.1ContigMCLC00000000SAMD00052672
HE-MDREc52
GCA_003731275.1ContigMCLA00000000SAMD00052670
HE-MDREc50
GCA_003731255.1ContigMCLD00000000SAMD00052673
HE-MDREc53
GCA_003731235.1ContigMCLB00000000SAMD00052671
HE-MDREc51
GCA_003731215.1ContigMCKY00000000SAMD00052668
HE-MDREc48
GCA_003731195.1ContigMCKZ00000000SAMD00052669
HE-MDREc49
GCA_003731175.1ContigMCKW00000000SAMD00052666
HE-MDREc46
GCA_003731155.1ContigMCKV00000000SAMD00052665
HE-MDREc45
GCA_003731135.1ContigMCKX00000000SAMD00052667
HE-MDREc47
GCA_003731105.1ContigMCKU00000000SAMD00052664
HE-MDREc44
GCA_003731095.1ScaffoldMCKT00000000SAMD00052663
HE-MDREc43
GCA_003731075.1ContigMCKS00000000SAMD00052662
HE-MDREc42
GCA_003731055.1ContigMCKR00000000SAMD00052661
HE-MDREc41
GCA_003731035.1ScaffoldMCKQ00000000SAMD00052660
HE-MDREc40
GCA_003731015.1ContigMCKP00000000SAMD00052659
HE-MDREc39
GCA_003730985.1ContigMCKO00000000SAMD00052658
HE-MDREc38
GCA_003730975.1ContigMCKN00000000SAMD00052657
HE-MDREc37
GCA_003730955.1ContigMCKK00000000SAMD00052654
HE-MDREc34
GCA_003730915.1ContigMCKL00000000SAMD00052655
HE-MDREc35
GCA_003730925.1ContigMCKM00000000SAMD00052656
HE-MDREc36
GCA_003730855.1ContigMCKH00000000SAMD00052651
HE-MDREc31
GCA_003730875.1ContigMCKJ00000000SAMD00052653
HE-MDREc33
GCA_003730865.1ContigMCKI00000000SAMD00052652
HE-MDREc32
GCA_003730825.1ContigMCKF00000000SAMD00052649
HE-MDREc29
GCA_003730815.1ContigMCKG00000000SAMD00052650
HE-MDREc30
GCA_003730745.1ContigMCKC00000000SAMD00052646
HE-MDREc26
GCA_003730765.1ContigMCKD00000000SAMD00052647
HE-MDREc27
GCA_003730735.1ContigMCKB00000000SAMD00052645
HE-MDREc25
GCA_003730705.1ScaffoldMCJZ00000000SAMD00052644
HE-MDREc24
GCA_003730695.1ContigMCJY00000000SAMD00052643
HE-MDREc23
GCA_003730665.1ContigMCJW00000000SAMD00052641
HE-MDREc20
GCA_003730645.1ContigMCJX00000000SAMD00052642
HE-MDREc21
GCA_003730635.1ContigMCJU00000000SAMD00052639
HE-MDREc18
GCA_003730615.1ContigMCJT00000000SAMD00052638
HE-MDREc17
GCA_003730595.1ContigMCJV00000000SAMD00052640
HE-MDREc19
GCA_003730575.1ContigMCJS00000000SAMD00052637
HE-MDREc16
GCA_003730555.1ContigMCJR00000000SAMD00052636
HE-MDREc13
GCA_003730535.1ContigMCJQ00000000SAMD00052635
HE-MDREc12
GCA_003730515.1ScaffoldMCJP00000000SAMD00052634
HE-MDREc10
GCA_003730495.1ContigMCJM00000000SAMD00052631
HE-MDREc06
GCA_003730475.1ContigMCJO00000000SAMD00052633
HE-MDREc09
GCA_003730445.1ScaffoldMCJN00000000SAMD00052632
HE-MDREc07
GCA_003730435.1ContigMCJJ00000000SAMD00052628
HE-MDREc03
GCA_003730415.1ContigMCJI00000000SAMD00052627
HE-MDREc02
GCA_003730395.1ContigMCJL00000000SAMD00052630
HE-MDREc05
GCA_003730375.1ContigMCJK00000000SAMD00052629
HE-MDREc04
GCA_003730345.1ContigMCKA00000000SAMD00052626
HE-MDREc01
GCA_003730795.1ContigMCKE00000000SAMD00052648
HE-MDREc28
SRA Data Details
ParameterValue
Data volume, Gbases28
Data volume, Mbytes10156

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