Shigella (ID 273284) - BioProject

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Accession: PRJNA273284 ID: 273284

Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.

Accession	PRJNA273284
Data Type	Genome sequencing and assembly
Scope	Multispecies
Keyword	GMI
Organism	Shigella[Taxonomy ID: 620] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Publications	Gangiredla J et al., "Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.", Microbiol Resour Announc, 2018 Nov;7(21)
Submission	Registration date: 3-Mar-2018 FDA Center for Food Safety and Applied Nutrition
Related Resources	CFSAN WGS program
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	63994
WGS master	148
Genomic DNA	9
SRA Experiments	133
Protein Sequences	455324
Publications
PubMed	1
PMC	1
Other datasets
BioSample	161
Assembly	149

Assembly details:

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Assembly level

Number of Assemblies

1
21
55
77

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002967135.1	PUGN00000000		SAMN08542241	BS986	Shigella boydii
GCA_002967205.1	PUGO00000000		SAMN08542240	BS984	Shigella boydii
GCA_014039075.1	AAVFBJ000000000		SAMN04316448	CFSAN003703	Shigella boydii
GCA_014039695.1	AAVFBC000000000		SAMN04316453	CFSAN010953	Shigella boydii
GCA_014039295.1	AAVFAP000000000		SAMN04316455	ATCC 8704	Shigella boydii
GCA_014039635.1	AAVFBH000000000		SAMN04316449	CFSAN003845	Shigella boydii
GCA_002967275.1	PUGU00000000		SAMN08542234	BS978	Shigella dysenteriae
GCA_002967595.1	PUGV00000000		SAMN08542232	BS975	Shigella dysenteriae
GCA_002967245.1	PUGP00000000		SAMN08542239	BS983	Shigella dysenteriae
GCA_002967235.1	PUGT00000000		SAMN08542235	BS979	Shigella dysenteriae
GCA_002967495.1	PUGM00000000		SAMN08542242	BS987	Shigella dysenteriae
GCA_014039615.1	AAVFBE000000000		SAMN04316451	CFSAN010951	Shigella dysenteriae
GCA_014039595.1	AAVFBA000000000		SAMN04323388	CFSAN024430	Shigella dysenteriae
GCA_014039665.1	AAVFBD000000000		SAMN04323387	CFSAN024429	Shigella dysenteriae
GCA_014039655.1	AAVFBG000000000		SAMN04316452	ATCC 49551	Shigella dysenteriae
GCA_014039555.1	AAVFBB000000000		SAMN04323389	CFSAN024431	Shigella dysenteriae
GCA_002967445.1	PUHH00000000		SAMN08542219	BS938	Shigella flexneri
GCA_002967455.1	PUGJ00000000		SAMN08580446	BS973	Shigella flexneri
GCA_002967435.1	PUHE00000000		SAMN08542222	BS952	Shigella flexneri
GCA_002967405.1	PUHD00000000		SAMN08542223	BS956	Shigella flexneri
GCA_002967395.1	PUHC00000000		SAMN08542224	BS962	Shigella flexneri
GCA_002967375.1	PUHB00000000		SAMN08542225	BS966	Shigella flexneri
GCA_002967355.1	PUHA00000000		SAMN08542226	BS967	Shigella flexneri
GCA_002967625.1	PUHG00000000		SAMN08542220	BS942	Shigella flexneri
GCA_002967615.1	PUHI00000000		SAMN08542218	BS937	Shigella flexneri
GCA_002967655.1	PUHK00000000		SAMN08542215	SH199	Shigella flexneri
GCA_002967635.1	PUHJ00000000		SAMN08542216	SH200	Shigella flexneri
GCA_002967545.1	PUGX00000000		SAMN08542229	BS971	Shigella flexneri
GCA_002967575.1	PUHF00000000		SAMN08542221	BS951	Shigella flexneri
GCA_002967535.1	PUGS00000000		SAMN08542236	BS980	Shigella flexneri
GCA_002967315.1	PUGZ00000000		SAMN08542227	BS968	Shigella flexneri
GCA_002967295.1	PUGY00000000		SAMN08542228	BS970	Shigella flexneri
GCA_002967285.1	PUGW00000000		SAMN08542230	BS972	Shigella flexneri
GCA_002967195.1	PUGR00000000		SAMN08542237	BS981	Shigella flexneri
GCA_002967145.1	PUGL00000000		SAMN08542243	BS988	Shigella flexneri
GCA_002967095.1	PUGK00000000		SAMN08542244	BS989	Shigella flexneri
GCA_003123665.1	QDEA00000000		SAMN08542231	BS974	Shigella flexneri
GCA_002967515.2	PUGQ00000000		SAMN08542238	BS982	Shigella flexneri
GCA_013968225.1	AAVAAF000000000		SAMN08624101	96G126	Shigella flexneri
GCA_013968145.1	AAVAAE000000000		SAMN08624449	G045	Shigella flexneri
GCA_013968125.1	AAVAAB000000000		SAMN08624450	G057	Shigella flexneri
GCA_013968105.1	AAVAAD000000000		SAMN08624448	G106	Shigella flexneri
GCA_013968085.1	AAVAAA000000000		SAMN08624452	96G123	Shigella flexneri
GCA_013968025.1	AAUZZV000000000		SAMN08624484	96G083	Shigella flexneri
GCA_013968165.1	AAVAAG000000000		SAMN08624100	96G132	Shigella flexneri
GCA_013968065.1	AAUZZY000000000		SAMN08624454	96G142	Shigella flexneri
GCA_013968045.1	AAUZZX000000000		SAMN08624458	96G127	Shigella flexneri
GCA_013967995.1	AAUZZW000000000		SAMN08624485	96G084	Shigella flexneri
GCA_013967925.1	AAUZZU000000000		SAMN08624486	G184	Shigella flexneri
GCA_013967745.1	AAUZZS000000000		SAMN08624519	96G082	Shigella flexneri
GCA_013968385.1	AAVAAC000000000		SAMN08624451	96G169	Shigella flexneri
GCA_013968365.1	AAUZZZ000000000		SAMN08624453	96G058	Shigella flexneri
GCA_033940825.1	ABPDJZ000000000		SAMN38372203	ESP23-9201	Shigella sonnei
GCA_002442535.1		9	SAMN03612247	CFSAN030807	Shigella sonnei
GCA_013988475.1	AAVBID000000000		SAMN07571594	PSU_0216	Shigella sonnei
GCA_013988575.1	AAVBIE000000000		SAMN07571562	PSU_0218	Shigella sonnei
GCA_013988555.1	AAVBIF000000000		SAMN07571563	PSU_0219	Shigella sonnei
GCA_013988535.1	AAVBIG000000000		SAMN07571565	PSU_0217	Shigella sonnei
GCA_013986635.1	AAVBEJ000000000		SAMN07571566	PSU_0212	Shigella sonnei
GCA_013986615.1	AAVBEI000000000		SAMN07571572	PSU_0210	Shigella sonnei
GCA_013986655.1	AAVBEK000000000		SAMN07571571	PSU_0211	Shigella sonnei
GCA_013985675.1	AAVBEO000000000		SAMN07571573	PSU_0215	Shigella sonnei
GCA_013985735.1	AAVBEN000000000		SAMN07571653	PSU_0209	Shigella sonnei
GCA_013985745.1	AAVBEL000000000		SAMN07571568	PSU_0214	Shigella sonnei
GCA_013985655.1	AAVBEM000000000		SAMN07571567	PSU_0213	Shigella sonnei
GCA_013980915.1	AAVAVE000000000		SAMN07571651	PSU_0208	Shigella sonnei
GCA_013980975.1	AAVAVG000000000		SAMN07571618	PSU_0205	Shigella sonnei
GCA_013980955.1	AAVAVF000000000		SAMN07571584	PSU_0197	Shigella sonnei
GCA_013980935.1	AAVAVD000000000		SAMN07571616	PSU_0206	Shigella sonnei
GCA_013980895.1	AAVAUX000000000		SAMN07571614	PSU_0203	Shigella sonnei
GCA_013980775.1	AAVAUV000000000		SAMN07571612	PSU_0204	Shigella sonnei
GCA_013981835.1	AAVAUZ000000000		SAMN07571598	PSU_0198	Shigella sonnei
GCA_013981775.1	AAVAVA000000000		SAMN07571636	PSU_0201	Shigella sonnei
GCA_013981735.1	AAVAVB000000000		SAMN07571602	PSU_0199	Shigella sonnei
GCA_013981795.1	AAVAVC000000000		SAMN07571648	PSU_0207	Shigella sonnei
GCA_013981715.1	AAVAUY000000000		SAMN07571634	PSU_0200	Shigella sonnei
GCA_013980515.1	AAVAUU000000000		SAMN07571633	PSU_0202	Shigella sonnei

SRA Data Details

Parameter	Value
Data volume, Gbases	55
Data volume, Mbytes	35057

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Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

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