Chimpanzee, orangutan, and human genome assemblies (ID 369439) - BioProject

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Accession: PRJNA369439 ID: 369439

Chimpanzee, orangutan, and human genome assemblies

Sequence and assembly of great-ape genomes including annotation and comparative analyses using long- and short-read sequencing modalities.

Target genomes include chimpanzee (Pan troglodytes, Clint (male)), orangutan (Pongo abelii, Susie (female)), CHM13 (Homo sapiens hydatidiform mole), and YRI (Homo sapiens, Yoruban female). More...

Accession	PRJNA369439
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Primates[Taxonomy ID: 9443] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates
Publications	Finstermeier K et al., "A mitogenomic phylogeny of living primates.", PLoS One, 2013;8(7):e69504
Submission	Registration date: 16-Jan-2018 University of Washington
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2988
WGS master	6
Genomic DNA	212
SRA Experiments	589
Protein Sequences	179779
Publications
PubMed	1
PMC	1
Other datasets
BioSample	10
Assembly	6
Supplementary data
BioNano map	7

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Contig

Total

4
2
6

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_008122165.1	SRLZ00000000	24	SAMN11078986	western lowland gorilla	Gorilla gorilla gorilla
GCA_002884475.1	NTIB00000000		SAMN03838746	NA19240	Homo sapiens
GCA_002884485.1	NTIA00000000		SAMN03255769	CHM13	Homo sapiens
GCA_006542625.1	VIFL00000000	26	SAMN11124083	Asia	Nomascus leucogenys
GCA_002880755.3	NBAG00000000	24	SAMN06272697	Yerkes chimp pedigree #C0471 (Clint)	Pan troglodytes
GCA_002880775.3	NDHI00000000	24	SAMN06275555	Susie	Pongo abelii

SRA Data Details

Parameter	Value
Data volume, Gbases	3,159
Data volume, Tbytes	9.56

Related Project Category: RefseqGenbank

PRJNA564096 : Primates RefSeq Genome sequencing and assembly

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Chimpanzee, orangutan, and human genome assemblies

Sequence and assembly of great-ape genomes including annotation and comparative analyses using long- and short-read sequencing modalities.

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