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Accession: PRJEB1397 ID: 268726

Phylogenomic analysis of blood and stool isolates of Salmonella Weltevreden from Vietnam

Salmonella enterica serovar Weltevreden (S. Weltevreden) is an emerging cause of diarrheal and invasive disease in humans residing in tropical regions. More...
AccessionPRJEB1397
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsMakendi C et al., "A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions.", PLoS Negl Trop Dis, 2016 Feb;10(2):e0004446
SubmissionRegistration date: 27-Nov-2014
Wellcome Sanger Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7766
WGS master112
Genomic DNA9
SRA Experiments373
Protein Sequences18992
Publications
PubMed1
PMC1
Other datasets
BioSample350
Assembly116
Assembly details:
Assembly levelNumber of Assemblies
4
106
6
116
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_001411455.1ScaffoldCZNC00000000
SAMEA1904394
2511STDY5462405
GCA_001411435.1ScaffoldCZMW00000000
SAMEA2336294
2511STDY5712447
GCA_001411355.1ScaffoldCZOO00000000
SAMEA2336269
2511STDY5712422
GCA_001411335.1ScaffoldCZNY00000000
SAMEA2336263
2511STDY5712416
GCA_001411315.1ScaffoldCZOX00000000
SAMEA2336230
2511STDY5712383
GCA_001411295.1ScaffoldCZLL00000000
SAMEA1904398
2511STDY5462406
GCA_001411275.1ContigCZME00000000
SAMEA1904395
2511STDY5462408
GCA_001411155.1ScaffoldCZOF00000000
SAMEA2336245
2511STDY5712398
GCA_001411135.1ScaffoldCZOQ00000000
SAMEA2336278
2511STDY5712431
GCA_001411115.1ContigCZMR00000000
SAMEA1904391
2511STDY5462395
GCA_001411255.1ScaffoldCZNT00000000
SAMEA2336264
2511STDY5712417
GCA_001411235.1ScaffoldCZLZ00000000
SAMEA2336290
2511STDY5712443
GCA_001411215.1ScaffoldCZMY00000000
SAMEA2336256
2511STDY5712409
GCA_001411195.1ScaffoldCZNJ00000000
SAMEA1904383
2511STDY5462394
GCA_001411175.1ScaffoldCZMF00000000
SAMEA1904386
2511STDY5462398
GCA_001410595.1ScaffoldCZLR00000000
SAMEA2336300
2511STDY5712453
GCA_001410575.1ScaffoldCZLP00000000
SAMEA2336286
2511STDY5712439
GCA_001410555.1ScaffoldCZLV00000000
SAMEA1904393
2511STDY5462403
GCA_001410695.1ScaffoldCZLK00000000
SAMEA2336297
2511STDY5712450
GCA_001410675.1ScaffoldCZPH00000000
SAMEA2336270
2511STDY5712423
GCA_001411395.1ScaffoldCZOE00000000
SAMEA2336282
2511STDY5712435
GCA_001411375.1ScaffoldCZOL00000000
SAMEA2336272
2511STDY5712425
GCA_001410535.1ScaffoldCZNZ00000000
SAMEA2336253
2511STDY5712406
GCA_001410515.1ScaffoldCZPG00000000
SAMEA2336279
2511STDY5712432
GCA_001410495.1ScaffoldCZNW00000000
SAMEA2161684
2511STDY5564063
GCA_001410475.1ScaffoldCZOM00000000
SAMEA2149665
2511STDY5564066
GCA_001410455.1ScaffoldCZNM00000000
SAMEA1904406
2511STDY5462419
GCA_001410435.1ScaffoldCZLN00000000
SAMEA1904399
2511STDY5462410
GCA_001410415.1ScaffoldCZMI00000000
SAMEA2336295
2511STDY5712448
GCA_001410395.1ScaffoldCZOD00000000
SAMEA2336261
2511STDY5712414
GCA_001410375.1ScaffoldCZOP00000000
SAMEA2336273
2511STDY5712426
GCA_001410355.1ScaffoldCZMK00000000
SAMEA2336288
2511STDY5712441
GCA_001411095.1ScaffoldCZPL00000000
SAMEA2336293
2511STDY5712446
GCA_001411075.1ScaffoldCZLM00000000
SAMEA2336301
2511STDY5712454
GCA_001411055.1ContigCZNI00000000
SAMEA1904382
2511STDY5462393
GCA_001411035.1ScaffoldCZOR00000000
SAMEA2336237
2511STDY5712390
GCA_001411015.1ScaffoldCZMQ00000000
SAMEA1904397
2511STDY5462404
GCA_001410995.1ScaffoldCZOK00000000
SAMEA2336277
2511STDY5712430
GCA_001410975.1ScaffoldCZPP00000000
SAMEA2336251
2511STDY5712404
GCA_001410955.1ScaffoldCZOW00000000
SAMEA2151809
2511STDY5564062
GCA_001410935.1ScaffoldCZNH00000000
SAMEA1904379
2511STDY5462390
GCA_001410915.1ScaffoldCZNQ00000000
SAMEA2336246
2511STDY5712399
GCA_001410895.1ScaffoldCZPI00000000
SAMEA2336284
2511STDY5712437
GCA_001410875.1ScaffoldCZMJ00000000
SAMEA2336285
2511STDY5712438
GCA_001410855.1ScaffoldCZNP00000000
SAMEA2336276
2511STDY5712429
GCA_001410835.1ScaffoldCZLX00000000
SAMEA1904375
2511STDY5462386
GCA_001410815.1ScaffoldCZNR00000000
SAMEA2151670
2511STDY5564064
GCA_001410795.1ScaffoldCZNG00000000
SAMEA1904409
2511STDY5462418
GCA_001410775.1ScaffoldCZPE00000000
SAMEA2336235
2511STDY5712388
GCA_001410755.1ScaffoldCZOJ00000000
SAMEA2336243
2511STDY5712396
GCA_001410735.1ScaffoldCZPQ00000000
SAMEA2336283
2511STDY5712436
GCA_001410715.1ScaffoldCZMV00000000
SAMEA1904402
2511STDY5462412
GCA_001410055.1ScaffoldCZPO00000000
SAMEA2336271
2511STDY5712424
GCA_001410035.1ScaffoldCZNL00000000
SAMEA1904376
2511STDY5462389
GCA_001410095.1ContigCZND00000000
SAMEA1904404
2511STDY5462416
GCA_001410075.1ScaffoldCZMA00000000
SAMEA2336258
2511STDY5712411
GCA_001410135.1ScaffoldCZNV00000000
SAMEA2336239
2511STDY5712392
GCA_001410115.1ScaffoldCZLQ00000000
SAMEA1904387
2511STDY5462397
GCA_001410175.1ScaffoldCZPB00000000
SAMEA2336265
2511STDY5712418
GCA_001410155.1ScaffoldCZOC00000000
SAMEA2336275
2511STDY5712428
GCA_001410295.1ScaffoldCZOI00000000
SAMEA2336238
2511STDY5712391
GCA_001410275.1ScaffoldCZMB00000000
SAMEA2336298
2511STDY5712451
GCA_001410255.1ScaffoldCZPK00000000
SAMEA2336289
2511STDY5712442
GCA_001410235.1ScaffoldCZOZ00000000
SAMEA2336280
2511STDY5712433
GCA_001410215.1ScaffoldCZNN00000000
SAMEA1904381
2511STDY5462392
GCA_001410195.1ScaffoldCZMH00000000
SAMEA2336291
2511STDY5712444
GCA_001410335.1ScaffoldCZMC00000000
SAMEA2336308
2511STDY5712461
GCA_001410315.1ScaffoldCZLO00000000
SAMEA2336257
2511STDY5712410
GCA_001410655.1ScaffoldCZLJ00000000
SAMEA2336292
2511STDY5712445
GCA_001410635.1ScaffoldCZOV00000000
SAMEA2336233
2511STDY5712386
GCA_001410615.1ScaffoldCZOY00000000
SAMEA2336240
2511STDY5712393
GCA_001409735.1ScaffoldCZML00000000
SAMEA2336305
2511STDY5712458
GCA_001409715.1ScaffoldCZNK00000000
SAMEA1904380
2511STDY5462391
GCA_001409775.1ScaffoldCZOT00000000
SAMEA2336247
2511STDY5712400
GCA_001409755.1ScaffoldCZMX00000000
SAMEA2336302
2511STDY5712455
GCA_001409815.1ScaffoldCZNO00000000
SAMEA2336250
2511STDY5712403
GCA_001409795.1ScaffoldCZMU00000000
SAMEA2336307
2511STDY5712460
GCA_001409855.1ScaffoldCZLS00000000
SAMEA1904378
2511STDY5462387
GCA_001409835.1ScaffoldCZLI00000000
SAMEA2336287
2511STDY5712440
GCA_001409895.1ScaffoldCZNU00000000
SAMEA2336248
2511STDY5712401
GCA_001409875.1ContigCZMD00000000
SAMEA1904389
2511STDY5462396
GCA_001409935.1ScaffoldCZPC00000000
SAMEA2336268
2511STDY5712421
GCA_001409915.1ScaffoldCZOH00000000
SAMEA2336249
2511STDY5712402
GCA_001409975.1ScaffoldCZNB00000000
SAMEA2336255
2511STDY5712408
GCA_001409955.1ScaffoldCZON00000000
SAMEA2336234
2511STDY5712387
GCA_001410015.1ScaffoldCZNF00000000
SAMEA1904407
2511STDY5462417
GCA_001409995.1ScaffoldCZNS00000000
SAMEA2336236
2511STDY5712389
GCA_001409495.1ScaffoldCZOA00000000
SAMEA2152248
2511STDY5564065
GCA_001409475.1ScaffoldCZMS00000000
SAMEA2336299
2511STDY5712452
GCA_001409535.1ScaffoldCZMZ00000000
SAMEA2336260
2511STDY5712413
GCA_001409515.1ScaffoldCZMT00000000
SAMEA1904396
2511STDY5462409
GCA_001409575.1ScaffoldCZLW00000000
SAMEA2336306
2511STDY5712459
GCA_001409555.1ScaffoldCZPD00000000
SAMEA2336267
2511STDY5712420
GCA_001409615.1ScaffoldCZMM00000000
SAMEA1904385
2511STDY5462400
GCA_001409595.1ScaffoldCZOS00000000
SAMEA2336254
2511STDY5712407
GCA_001409655.1ScaffoldCZMN00000000
SAMEA2336303
2511STDY5712456
GCA_001409635.1ScaffoldCZNA00000000
SAMEA1904392
2511STDY5462407
GCA_001409695.1ScaffoldCZPM00000000
SAMEA2336262
2511STDY5712415
GCA_001409675.1ScaffoldCZLT00000000
SAMEA2336296
2511STDY5712449
GCA_001409455.1ScaffoldCZMP00000000
SAMEA2336304
2511STDY5712457
GCA_001409435.1ContigCZLU00000000
SAMEA1904384
2511STDY5462399
GCA_001409415.1ScaffoldCZNX00000000
SAMEA2336229
2511STDY5712382
GCA_001409395.1ScaffoldCZMO00000000
SAMEA1904390
2511STDY5462402
GCA_001409375.1ScaffoldCZPA00000000
SAMEA2336274
2511STDY5712427
GCA_001409355.1ScaffoldCZOG00000000
SAMEA2336266
2511STDY5712419
GCA_001409335.1ScaffoldCZLY00000000
SAMEA1904388
2511STDY5462401
GCA_001409315.1ScaffoldCZPF00000000
SAMEA2336244
2511STDY5712397
GCA_001409295.1ScaffoldCZNE00000000
SAMEA1904405
2511STDY5462415
GCA_001409275.1ScaffoldCZOU00000000
SAMEA2336242
2511STDY5712395
GCA_001409255.1ScaffoldCZOB00000000
SAMEA2336252
2511STDY5712405
GCA_001409235.1ScaffoldCZPN00000000
SAMEA2336281
2511STDY5712434
GCA_001409215.1ScaffoldCZMG00000000
SAMEA2336259
2511STDY5712412
GCA_001409195.1Complete genomeSAMEA1904401
2511STDY5462413
GCA_001409175.1Complete genomeSAMEA2336232
2511STDY5712385
GCA_001409155.1Complete genomeSAMEA2336231
2511STDY5712384
GCA_001409135.1Complete genomeSAMEA1904377
2511STDY5462388
SRA Data Details
ParameterValue
Data volume, Gbases210
Data volume, Tbytes0.13

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