Genetic traits underlying association of IncK2 pla... (ID 1197264) - BioProject

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Accession: PRJEB73354 ID: 1197264

Genetic traits underlying association of IncK2 plasmids and E. coli host to the chicken gut.

Genetic adaptation of IncK2 plasmids to chicken gut.

This study included 59 IncK2 carrying isolates of human (n=17), poultry (n=34), cattle (n=3), pig (n=4) and environmental (n=1) origin from 11 European countries and Lebanon. More...

Accession	PRJEB73354
Data Type	Genome sequencing
Scope	Monoisolate
Submission	Registration date: 12-Dec-2024 National Institute for Public Health and the Environment

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1376
WGS master	59
SRA Experiments	113
Other datasets
BioSample	59
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

59
59

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_964237775.1	CAXSJT000000000	SAMEA115457939	20-AB00715	Escherichia coli
GCA_964237975.1	CAXSJZ000000000	SAMEA115457956	ESBL20170103	Escherichia coli
GCA_964246355.1	CAXTQA000000000	SAMEA115457946	3863	Escherichia coli
GCA_964246605.1	CAXTRC000000000	SAMEA115457944	3460	Escherichia coli
GCA_964238035.1	CAXSKQ000000000	SAMEA115457938	20-AB00383	Escherichia coli
GCA_964239505.1	CAXSQJ000000000	SAMEA115457958	ESBL20200149	Escherichia coli
GCA_964237045.1	CAXSFY000000000	SAMEA115457922	08HR1-1	Escherichia coli
GCA_964251255.1	CAXUIT000000000	SAMEA115457940	20-ANT000252	Escherichia coli
GCA_964254405.1	CAXUTQ000000000	SAMEA115457955	20151738	Escherichia coli
GCA_964239065.1	CAXSOU000000000	SAMEA115457926	13-AB00813	Escherichia coli
GCA_964238375.1	CAXSLS000000000	SAMEA115457974	U16_0754X	Escherichia coli
GCA_964249815.1	CAXUDI000000000	SAMEA115457942	2279	Escherichia coli
GCA_964239795.1	CAXSQY000000000	SAMEA115457929	16-AB02176	Escherichia coli
GCA_964251865.1	CAXULF000000000	SAMEA115457934	18039485	Escherichia coli
GCA_964254415.1	CAXUTP000000000	SAMEA115457954	20160770	Escherichia coli
GCA_964242085.1	CAXSZP000000000	SAMEA115457963	PE13-134	Escherichia coli
GCA_964248935.1	CAXUAD000000000	SAMEA115457972	TD289	Escherichia coli
GCA_964254385.1	CAXUTM000000000	SAMEA115457968	20151632	Escherichia coli
GCA_964257805.1	CAXVGP000000000	SAMEA115457976	VEG0039-2	Escherichia coli
GCA_964243565.1	CAXTET000000000	SAMEA115457953	CK91ctx-18	Escherichia coli
GCA_964261935.1	CAXVRM000000000	SAMEA115457965	RIVM_C037143	Escherichia coli
GCA_964257775.1	CAXVGW000000000	SAMEA115457966	S10CTX	Escherichia coli
GCA_964239825.1	CAXSRL000000000	SAMEA115457973	U15_0059X	Escherichia coli
GCA_964249585.1	CAXUBT000000000	SAMEA115457930	1795	Escherichia coli
GCA_964257765.1	CAXVGV000000000	SAMEA115457961	ND24FEP	Escherichia coli
GCA_964257785.1	CAXVGL000000000	SAMEA115457980	VGOL1159-1	Escherichia coli
GCA_964254435.1	CAXUTO000000000	SAMEA115457969	20151654	Escherichia coli
GCA_964257755.1	CAXVGK000000000	SAMEA115457947	63HR1-5	Escherichia coli
GCA_964257845.1	CAXVGU000000000	SAMEA115457978	VGO1427	Escherichia coli
GCA_964257835.1	CAXVGQ000000000	SAMEA115457967	S4CTX	Escherichia coli
GCA_964257795.1	CAXVGO000000000	SAMEA115457975	VEG0039-1	Escherichia coli
GCA_964257875.1	CAXVGT000000000	SAMEA115457951	B23CTX	Escherichia coli
GCA_964254395.1	CAXUTN000000000	SAMEA115457970	20151857	Escherichia coli
GCA_964236785.1	CAXSFK000000000	SAMEA115457923	09MR1-3	Escherichia coli
GCA_964240945.1	CAXSVU000000000	SAMEA115457941	21-AB00392	Escherichia coli
GCA_964249015.1	CAXUAE000000000	SAMEA115457935	18053823	Escherichia coli
GCA_964257855.1	CAXVGR000000000	SAMEA115457948	65GR1-2	Escherichia coli
GCA_964254425.1	CAXUTR000000000	SAMEA115457971	20151660	Escherichia coli
GCA_964239845.1	CAXSRI000000000	SAMEA115457962	P-13-19418-486B-CTX	Escherichia coli
GCA_964251315.1	CAXUJI000000000	SAMEA115457925	139-2014-01-3678	Escherichia coli
GCA_964238355.1	CAXSLO000000000	SAMEA115457959	ESBL20210072	Escherichia coli
GCA_964257815.1	CAXVGN000000000	SAMEA115457977	VEG-1505-1	Escherichia coli
GCA_964257745.1	CAXVGJ000000000	SAMEA115457943	25GR2-1	Escherichia coli
GCA_964237995.1	CAXSKH000000000	SAMEA115457960	M18_0090X	Escherichia coli
GCA_964257865.1	CAXVGS000000000	SAMEA115457979	VGOL0538	Escherichia coli
GCA_964239455.1	CAXSQA000000000	SAMEA115457927	13-AB01602	Escherichia coli
GCA_964257825.1	CAXVGM000000000	SAMEA115457924	1-2016-40-13912	Escherichia coli
GCA_964246415.1	CAXTQI000000000	SAMEA115457945	3818	Escherichia coli
GCA_964241885.1	CAXSYY000000000	SAMEA115457937	19-AB02189	Escherichia coli
GCA_964249655.1	CAXUCN000000000	SAMEA115457952	CK67ctx-18	Escherichia coli
GCA_964249055.1	CAXUAK000000000	SAMEA115457931	18011377	Escherichia coli
GCA_964242445.1	CAXSZO000000000	SAMEA115457936	18053838	Escherichia coli
GCA_964248335.1	CAXTXK000000000	SAMEA115457933	18029473	Escherichia coli
GCA_964252025.1	CAXULO000000000	SAMEA115457949	77-2014-01-7010	Escherichia coli
GCA_964250625.1	CAXUGC000000000	SAMEA115457928	157-2014-01-7282	Escherichia coli
GCA_964242605.1	CAXSZQ000000000	SAMEA115457932	18028027	Escherichia coli
GCA_964247185.1	CAXTTI000000000	SAMEA115457950	AB4256	Escherichia coli
GCA_964241655.1	CAXSYL000000000	SAMEA115457957	ESBL20170347	Klebsiella pneumoniae
GCA_964261945.1	CAXVRN000000000	SAMEA115457964	RIVM_C007359	Klebsiella pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	33
Data volume, Mbytes	29367

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Genetic traits underlying association of IncK2 plasmids and E. coli host to the chicken gut.

Genetic adaptation of IncK2 plasmids to chicken gut.

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