ID 1101888 - BioProject

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Accession: PRJNA1101888 ID: 1101888

Whole genome sequencing of opportunistic pathogens from aquaculture

Whole genome sequencing was applied in this study to characterise the genomes of important opportunistic pathogens (motile Aeromonas sp. More...

Accession	PRJNA1101888
Data Type	Genome sequencing
Scope	Multispecies
Grants	"Polyvalent Vaccine for Freshwater Catfish (Pangasius)" (Grant ID 109057, 1) International Development Research Centre ; 2) UK Government Department of Health and Social Care; 3) Global AMR Innovation Fund)
Submission	Registration date: 18-Apr-2024 University of Stirling
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	102
Protein Sequences	102415
Other datasets
BioSample	31
Assembly	31

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Chromosome

Total

28
3
31

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_042638385.1	4	SAMN41005124	Ei-103	Edwardsiella ictaluri
GCA_042638375.1	4	SAMN41005125	Ei-104	Edwardsiella ictaluri
GCA_042638365.1	3	SAMN41005126	Ei-84	Edwardsiella ictaluri
GCA_042638355.1	3	SAMN41005127	Ei-80	Edwardsiella ictaluri
GCA_042638345.1	3	SAMN41005128	Ei-77cfu1pp	Edwardsiella ictaluri
GCA_042638335.1	2	SAMN41005129	Ei-71	Edwardsiella ictaluri
GCA_042638325.1	2	SAMN41005130	Ei-69	Edwardsiella ictaluri
GCA_042638315.1	3	SAMN41005131	Ei-85	Edwardsiella ictaluri
GCA_042638305.1	3	SAMN41005132	Ei-89cfu1pp	Edwardsiella ictaluri
GCA_042638295.1	3	SAMN41005133	Ei-90	Edwardsiella ictaluri
GCA_042638285.1	3	SAMN41005134	Ei-96cfu2	Edwardsiella ictaluri
GCA_042638275.1	2	SAMN41005135	Ei-62	Edwardsiella ictaluri
GCA_042638265.1	4	SAMN41005136	Ei-64	Edwardsiella ictaluri
GCA_042638255.1	4	SAMN41005137	Ei-60	Edwardsiella ictaluri
GCA_042638245.1	4	SAMN41005138	Ei-59	Edwardsiella ictaluri
GCA_042638235.1	3	SAMN41005139	Ei-57	Edwardsiella ictaluri
GCA_042638225.1	3	SAMN41005140	Ei-54	Edwardsiella ictaluri
GCA_042638215.1	2	SAMN41005141	Ei-VN5	Edwardsiella ictaluri
GCA_042638205.1	3	SAMN41005142	Ei-110066	Edwardsiella ictaluri
GCA_042638195.1	3	SAMN41005143	Ei-47	Edwardsiella ictaluri
GCA_042638185.1	3	SAMN41005144	Ei-39shipment9	Edwardsiella ictaluri
GCA_042638175.1	4	SAMN41005145	Ei-40shipment7	Edwardsiella ictaluri
GCA_042638165.1	2	SAMN41005146	Ei-46	Edwardsiella ictaluri
GCA_042638155.1	4	SAMN41005147	Ei-45	Edwardsiella ictaluri
GCA_042638145.1	4	SAMN41005148	Ei-E137	Edwardsiella ictaluri
GCA_042638135.1	5	SAMN41005149	Ei-E126	Edwardsiella ictaluri
GCA_042638125.1	5	SAMN41005150	Ei-255	Edwardsiella ictaluri
GCA_042638115.1	4	SAMN41005151	Ei-VN2C02	Edwardsiella ictaluri
GCA_042638105.1	4	SAMN41005152	Ei-180	Edwardsiella ictaluri
GCA_042638095.1	3	SAMN41005153	Ei-224	Edwardsiella ictaluri
GCA_042638085.1	3	SAMN41005154	Ei-31	Edwardsiella ictaluri

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Whole genome sequencing of opportunistic pathogens from aquaculture

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