UPHL Gram-negative bacteria (ID 812595) - BioProject

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Accession: PRJNA812595 ID: 812595

UPHL Gram-negative bacteria

Assorted bacteria with public health implications

Bacteria with public health implications due to virulence or antimicrobial resistance. More...

Accession	PRJNA812595
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 3-Mar-2022 Utah Public Health Laboratory Infectious Disease submission group

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	847
WGS master	5
Genomic DNA	842
SRA Experiments	316
Protein Sequences	1135533
Other datasets
BioSample	306
Assembly	238

Assembly details:

Download

Assembly level

Number of Assemblies

230
4
4
238

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_025426095.1		1	SAMN30715403	2021CK-01139	Achromobacter xylosoxidans
GCA_036718155.2		3	SAMN39998251	2024CK-00130	Acinetobacter baumannii
GCA_037008665.2		5	SAMN40254323	2024CK-00250	Acinetobacter baumannii
GCA_038522965.2		2	SAMN41094845	2024CK-00537	Acinetobacter baumannii
GCA_038418365.2		3	SAMN41020287	2024CK-00462	Acinetobacter baumannii
GCA_038418265.2		2	SAMN41020280	2024CK-00452	Acinetobacter baumannii
GCA_038627275.2		2	SAMN41094846	2024CK-00536	Acinetobacter baumannii
GCA_038069235.2		3	SAMN40921371	2024CK-00375	Acinetobacter baumannii
GCA_038069255.2		3	SAMN40921370	2024CK-00376	Acinetobacter baumannii
GCA_038627255.2		2	SAMN41094844	2024CK-00538	Acinetobacter baumannii
GCA_038627335.2		4	SAMN41094848	2024CK-00546	Acinetobacter baumannii
GCA_039518815.2		2	SAMN40557123	2024CK-00319	Acinetobacter baumannii
GCA_037008745.2		3	SAMN40254326	2024CK-00246	Acinetobacter baumannii
GCA_039654205.1		5	SAMN40443483	2024CK-00247	Acinetobacter baumannii
GCA_045689365.1		4	SAMN38122020	2023CK-01292	Acinetobacter baumannii
GCA_037751415.2		5	SAMN40632425	2024CK-00329	Acinetobacter baumannii
GCA_037429075.2		3	SAMN40557119	2024CK-00278	Acinetobacter baumannii
GCA_032634445.3		4	SAMN37709326	2023CK-01274	Acinetobacter baumannii
GCA_027992645.4		2	SAMN32733976	2022CK-00772	Acinetobacter baumannii
GCA_038418285.2		3	SAMN41020282	2024CK-00461	Acinetobacter baumannii
GCA_028622915.1		2	SAMN32734002	2022CK-00843	Acinetobacter baumannii
GCA_028622775.1		2	SAMN32733960	2022CK-00784	Acinetobacter baumannii
GCA_028622715.1		3	SAMN32734006	2022CK-00839	Acinetobacter baumannii
GCA_028622695.1		2	SAMN32733979	2022CK-00783	Acinetobacter baumannii
GCA_023093135.2		2	SAMN27739163	2022CK-00251	Acinetobacter baumannii
GCA_022916555.2		3	SAMN27182072	2022CK-00185	Acinetobacter baumannii
GCA_023615705.2		3	SAMN28788563	2022CK-00337	Acinetobacter baumannii
GCA_024922185.2		2	SAMN30655645	2022CK-00480	Acinetobacter baumannii
GCA_023054035.2		2	SAMN27591179	2022CK-00241	Acinetobacter baumannii
GCA_024106315.2		3	SAMN29151496	2022CK-00371	Acinetobacter baumannii
GCA_023615345.2		2	SAMN28788543	2022CK-00317	Acinetobacter baumannii
GCA_022107375.2		2	SAMN25755497	2022CK-00063	Acinetobacter baumannii
GCA_022916135.2		2	SAMN27182098	2022CK-00211	Acinetobacter baumannii
GCA_023615745.2		3	SAMN28788566	2022CK-00340	Acinetobacter baumannii
GCA_025258845.1		3	SAMN21493862	2021CK-01335	Acinetobacter baumannii
GCA_025258805.1		3	SAMN21493860	2021CK-01333	Acinetobacter baumannii
GCA_025258785.1		3	SAMN21493859	2021CK-01332	Acinetobacter baumannii
GCA_025258765.1		3	SAMN21493827	2021CK-01300	Acinetobacter baumannii
GCA_025258745.1		3	SAMN21924071	2021CK-01409	Acinetobacter baumannii
GCA_025258705.1		5	SAMN21924070	2021CK-01408	Acinetobacter baumannii
GCA_025369955.1		3	SAMN21924069	2021CK-01407	Acinetobacter baumannii
GCA_028634015.3		4	SAMN33288250	2023CK-00127	Acinetobacter baumannii
GCA_030704325.1		2	SAMN36514286	2023CK-00890	Acinetobacter baumannii
GCA_029767905.3		3	SAMN34191879	2023CK-00423	Acinetobacter baumannii
GCA_030718975.1		2	SAMN25755500	2022CK-00066	Acinetobacter baumannii
GCA_034331205.2		5	SAMN38788845	2023CK-01512	Acinetobacter baumannii
GCA_034126905.2		2	SAMN38646043	2023CK-01486	Acinetobacter baumannii
GCA_034126645.2		2	SAMN38646042	2023CK-01487	Acinetobacter baumannii
GCA_034494405.1		5	SAMN36514289	2023CK-00893	Acinetobacter baumannii
GCA_025398455.1		8	SAMN19317614	2021CK-01005	Acinetobacter variabilis
GCA_036352035.1		3	SAMN38122035	2023CK-01339	Burkholderia multivorans
GCA_031622855.2		4	SAMN37047109	PNUSAC038379	Campylobacter jejuni
GCA_031587675.2		4	SAMN37414731	PNUSAC039261	Campylobacter jejuni
GCA_031540305.2		4	SAMN37129250	PNUSAC038549	Campylobacter jejuni
GCA_025790865.1		1	SAMN09504270	PNUSAC004956	Campylobacter jejuni
GCA_005166165.2	AACERE000000000		SAMN06252844	PNUSAC001350	Campylobacter jejuni
GCA_031676455.2		4	SAMN36984220	PNUSAC038191	Campylobacter jejuni
GCA_032875135.2		4	SAMN37887032	PNUSAC040311	Campylobacter jejuni
GCA_031826325.2		4	SAMN37482744	PNUSAC039436	Campylobacter jejuni
GCA_031540025.2		4	SAMN37129247	PNUSAC038560	Campylobacter jejuni
GCA_031349165.2		4	SAMN37353824	PNUSAC039152	Campylobacter jejuni
GCA_030921305.2		4	SAMN37161002	PNUSAC038648	Campylobacter jejuni
GCA_031349105.2		4	SAMN37353822	PNUSAC039151	Campylobacter jejuni
GCA_031912465.2		4	SAMN36871560	PNUSAC037934	Campylobacter jejuni
GCA_031623015.2		4	SAMN37047108	PNUSAC038377	Campylobacter jejuni
GCA_032041175.2		4	SAMN36770491	PNUSAC037670	Campylobacter jejuni
GCA_031676495.2		4	SAMN36984215	PNUSAC038193	Campylobacter jejuni
GCA_031587895.2		4	SAMN37414735	PNUSAC039265	Campylobacter jejuni
GCA_033726075.2		4	SAMN38251288	2023CK-01304	Citrobacter amalonaticus
GCA_023756145.2		7	SAMN29151494	2022CK-00369	Citrobacter freundii
GCA_027271215.1		7	SAMN32252807	2953647	Citrobacter freundii
GCA_037008785.2		1	SAMN40254330	2024CK-00261	Elizabethkingia anophelis
GCA_031101875.3		1	SAMN36843060	2023CK-00934	Elizabethkingia anophelis
GCA_045690275.1		1	SAMN39998254	2024CK-00125	Elizabethkingia anophelis
GCA_023092945.2		2	SAMN27739174	2022CK-00262	Elizabethkingia anophelis
GCA_028898485.3		1	SAMN33554414	2023CK-00282	Elizabethkingia anophelis
GCA_024123775.2		1	SAMN29473046	2022CK-00380	Elizabethkingia meningoseptica
GCA_034509165.1		1	SAMN37752282	2023CK-01286	Elizabethkingia miricola
GCA_035556915.2		1	SAMN39334912	2024CK-00035	Enterobacter asburiae
GCA_028622135.1		5	SAMN32733969	2022CK-00757	Enterobacter asburiae
GCA_037008945.2		2	SAMN40254320	2024CK-00243	Enterobacter bugandensis
GCA_037008725.2		2	SAMN40254327	2024CK-00251	Enterobacter bugandensis
GCA_025426135.1		7	SAMN29981189	2022CK-00409	Enterobacter cloacae
GCA_038627045.2		3	SAMN41094953	2024CK-00476	Enterobacter hormaechei
GCA_038627095.2		3	SAMN41094957	2024CK-00534	Enterobacter hormaechei
GCA_038418305.2		6	SAMN41020283	2024CK-00459	Enterobacter hormaechei
GCA_038627025.2		3	SAMN41094952	2024CK-00477	Enterobacter hormaechei
GCA_038069265.2		4	SAMN40921372	2024CK-00374	Enterobacter hormaechei
GCA_038626985.2		4	SAMN41094950	2024CK-00479	Enterobacter hormaechei
GCA_036080935.2		4	SAMN39595401	2024CK-00066	Enterobacter hormaechei
GCA_036080915.2		5	SAMN39595400	2024CK-00067	Enterobacter hormaechei
GCA_031378325.2		6	SAMN36728752	2023CK-00897	Enterobacter hormaechei
GCA_039734725.2		2	SAMN41479334	2024CK-00699	Enterobacter hormaechei
GCA_045689385.1		1	SAMN38122033	2023CK-01311	Enterobacter hormaechei
GCA_045689375.1		5	SAMN38122031	2023CK-01313	Enterobacter hormaechei
GCA_025398715.1		3	SAMN30655620	2022CK-00453	Enterobacter hormaechei
GCA_028622735.1		9	SAMN32093416	2022CK-00700	Enterobacter hormaechei
GCA_027886545.1		5	SAMN15907137	2020CK-00202	Enterobacter hormaechei
GCA_027886525.1		7	SAMN15907139	2020CK-00204	Enterobacter hormaechei
GCA_027886505.1		7	SAMN15907138	2020CK-00203	Enterobacter hormaechei
GCA_029226365.1		3	SAMN15907149	2020CK-00214	Enterobacter hormaechei
GCA_028891505.1		6	SAMN15907141	2020CK-00206	Enterobacter hormaechei
GCA_028872235.1		7	SAMN15907159	2020CK-00224	Enterobacter hormaechei
GCA_028898905.1		7	SAMN15907134	2020CK-00199	Enterobacter hormaechei
GCA_025398395.2		3	SAMN16505100	2020CK-00376	Enterobacter hormaechei
GCA_029948145.1		5	SAMN15907133	2020CK-00198	Enterobacter hormaechei
GCA_038069355.2		2	SAMN40921367	2024CK-00368	Enterobacter kobei
GCA_028891545.1		4	SAMN15907151	2020CK-00216	Enterobacter kobei
GCA_030706805.1		3	SAMN32978021	2023CK-00067	Enterobacter ludwigii
GCA_038627005.2		4	SAMN41094951	2024CK-00478	Enterobacter roggenkampii
GCA_038627065.2		5	SAMN41094954	2024CK-00475	Escherichia coli
GCA_038627105.2		3	SAMN41094955	2024CK-00474	Escherichia coli
GCA_038627295.2		6	SAMN41094847	2024CK-00535	Escherichia coli
GCA_035557515.2		4	SAMN39334900	2023CK-01687	Escherichia coli
GCA_036713675.2		2	SAMN39998263	2024CK-00184	Escherichia coli
GCA_045347625.1		2	SAMN40557194	2024CK-1897675	Escherichia coli
GCA_039604535.3		4	SAMN41327117	2024CK-00616	Escherichia coli
GCA_036718175.2		4	SAMN39998267	2024CK-00188	Escherichia coli
GCA_033725995.2		6	SAMN38251294	2023CK-01341	Escherichia coli
GCA_031588155.2		3	SAMN37413890	PNUSAE151637	Escherichia coli
GCA_031588095.2		2	SAMN37413894	PNUSAE151638	Escherichia coli
GCA_025398375.1		12	SAMN17815181	2021CK-00607	Escherichia coli
GCA_025398755.1		8	SAMN30655617	2022CK-00450	Escherichia coli
GCA_025399135.1		2	SAMN07375592	PNUSAE008512	Escherichia coli
GCA_025399115.1		2	SAMN07363400	PNUSAE008406	Escherichia coli
GCA_025399095.1		2	SAMN10432165	PNUSAE019785	Escherichia coli
GCA_025399035.1		2	SAMN09489939	PNUSAE014970	Escherichia coli
GCA_025259645.1		2	SAMN24145077	2021CK-01784	Escherichia coli
GCA_025853875.1		7	SAMN21924052	2021CK-01361	Escherichia coli
GCA_025790905.1		2	SAMN15907166	2020CK-00232	Escherichia coli
GCA_003742765.3	RLKF00000000		SAMN10297797	PNUSAE019615	Escherichia coli
GCA_018071945.2	ABACVG000000000		SAMN15907123	2020CK-00188	Escherichia coli
GCA_030734165.1		2	SAMN36841952	PNUSAE145743	Escherichia coli
GCA_030733925.1		2	SAMN36841951	PNUSAE145745	Escherichia coli
GCA_030908685.1		2	SAMN36938186	PNUSAE146742	Escherichia coli O157:H7
GCA_030908705.1		3	SAMN36938185	PNUSAE146744	Escherichia coli O157:H7
GCA_030908745.1		2	SAMN36938187	PNUSAE146743	Escherichia coli O157:H7
GCA_030908725.1		2	SAMN36872530	PNUSAE146131	Escherichia coli O157:H7
GCA_030908665.1		3	SAMN36828866	PNUSAE145590	Escherichia coli O157:H7
GCA_030908645.1		2	SAMN36828864	PNUSAE145591	Escherichia coli O157:H7
GCA_034331185.2		6	SAMN38788848	2023CK-01509	Escherichia coli
GCA_034120885.2		5	SAMN38646034	2023CK-01482	Escherichia coli
GCA_031675475.2		2	SAMN36984461	PNUSAE147328	Escherichia coli
GCA_030939765.2		2	SAMN36984458	PNUSAE147324	Escherichia coli
GCA_036419615.1		2	SAMN36984462	PNUSAE147326	Escherichia coli
GCA_031675355.2		2	SAMN36984457	PNUSAE147325	Escherichia coli O157:H7
GCA_026729635.4		1	SAMN32093418	2022CK-00751	Klebsiella aerogenes
GCA_036810575.2		1	SAMN38122022	2023CK-01295	Klebsiella aerogenes
GCA_031042315.3		3	SAMN35365784	2023CK-00602	Klebsiella aerogenes
GCA_026220715.4		1	SAMN31759540	2022CK-00592	Klebsiella aerogenes
GCA_041283295.1		2	SAMN25755508	2022CK-00074	Klebsiella aerogenes
GCA_041282635.1		1	SAMN24965732	2021CK-01796	Klebsiella aerogenes
GCA_034330985.2		2	SAMN38788857	2023CK-01571	Klebsiella aerogenes
GCA_028622675.1		10	SAMN32733981	2022CK-00781	Klebsiella grimontii
GCA_028748965.1		6	SAMN15907146	2020CK-00211	Klebsiella grimontii
GCA_041282745.1		5	SAMN24965758	2021CK-01841	Klebsiella michiganensis
GCA_041283495.1		4	SAMN34191887	2023CK-00457	Klebsiella michiganensis
GCA_041283485.1		5	SAMN32093411	2022CK-00623	Klebsiella michiganensis
GCA_041283405.1		2	SAMN30655644	2022CK-00479	Klebsiella michiganensis
GCA_041283395.1		4	SAMN28103368	2022CK-00289	Klebsiella michiganensis
GCA_041283355.1		3	SAMN27182086	2022CK-00199	Klebsiella michiganensis
GCA_028736015.1		3	SAMN15907150	2020CK-00215	Klebsiella michiganensis
GCA_039605015.2		3	SAMN41327114	2024CK-00609	Klebsiella oxytoca
GCA_029226505.1		7	SAMN15907148	2020CK-00213	Klebsiella oxytoca
GCA_041283475.1		6	SAMN38251286	2023CK-01306	Klebsiella pasteurii
GCA_038630195.2		3	SAMN41094958	2024CK-00533	Klebsiella pneumoniae
GCA_038627175.2		3	SAMN41094956	2024CK-00473	Klebsiella pneumoniae
GCA_038418325.2		2	SAMN41020284	2024CK-00458	Klebsiella pneumoniae
GCA_038418385.2		7	SAMN41020286	2024CK-00456	Klebsiella pneumoniae
GCA_037009005.2		5	SAMN40254322	2024CK-00241	Klebsiella pneumoniae
GCA_037890715.1		6	SAMN39595402	2024CK-00065	Klebsiella pneumoniae
GCA_039653425.2		5	SAMN41407425	2024CK-00646	Klebsiella pneumoniae
GCA_042021345.1		3	SAMN43586368	2024CK-3593430	Klebsiella pneumoniae
GCA_038418345.2		3	SAMN41020285	2024CK-00457	Klebsiella pneumoniae
GCA_035557615.2		6	SAMN39334901	2023CK-01686	Klebsiella pneumoniae
GCA_035557175.2		7	SAMN39334914	2024CK-00033	Klebsiella pneumoniae
GCA_034126985.2		5	SAMN38646027	2023CK-01432	Klebsiella pneumoniae
GCA_039653445.2		4	SAMN41407426	2024CK-00645	Klebsiella pneumoniae
GCA_045287705.1		5	SAMN38122037	2023CK-01337	Klebsiella pneumoniae
GCA_025398355.1		5	SAMN24145033	2021CK-01729	Klebsiella pneumoniae
GCA_025398435.1		3	SAMN17815182	2021CK-00608	Klebsiella pneumoniae
GCA_025398695.1		1	SAMN14792099	2020CK-00096	Klebsiella pneumoniae
GCA_025259665.1		4	SAMN24523856	2021CK-01815	Klebsiella pneumoniae
GCA_028622755.1		4	SAMN32093417	2022CK-00752	Klebsiella pneumoniae
GCA_028622155.1		5	SAMN32733973	2022CK-00768	Klebsiella pneumoniae
GCA_027886565.1		5	SAMN15907136	2020CK-00201	Klebsiella pneumoniae
GCA_028872175.1		7	SAMN15907158	2020CK-00223	Klebsiella pneumoniae
GCA_028364475.3		5	SAMN32978013	2023CK-00047	Klebsiella pneumoniae
GCA_028626845.3		4	SAMN33288247	2023CK-00111	Klebsiella pneumoniae
GCA_031010555.2	ABLUVU000000000		SAMN36843059	2023CK-00929	Klebsiella pneumoniae
GCA_035621195.1		3	SAMN38122036	2023CK-01338	Klebsiella pneumoniae
GCA_034331225.2		4	SAMN38788849	2023CK-01508	Klebsiella variicola
GCA_025790845.1		4	SAMN28788546	2022CK-00320	Leclercia adecarboxylata
GCA_031658075.3		2	SAMN37442925	2023CK-01118	Proteus mirabilis
GCA_034330965.2		2	SAMN38788856	2023CK-01567	Proteus mirabilis
GCA_034330845.2		3	SAMN38788851	2023CK-01506	Providencia rettgeri
GCA_038069215.2		2	SAMN40921369	2024CK-00366	Providencia stuartii
GCA_027286065.1		1	SAMN20960141	2021CK-01296	Providencia stuartii
GCA_027286045.1		2	SAMN20674993	2021CK-01196	Providencia stuartii
GCA_027286025.1		1	SAMN17039451	2020CK-00448	Providencia stuartii
GCA_038069335.2		1	SAMN40921362	2024CK-00357	Pseudomonas aeruginosa
GCA_038418245.2		1	SAMN41020281	2024CK-00455	Pseudomonas aeruginosa
GCA_038069315.2		1	SAMN40921363	2024CK-00356	Pseudomonas aeruginosa
GCA_035557195.2		2	SAMN39334915	2024CK-00032	Pseudomonas aeruginosa
GCA_037890725.1		1	SAMN39122632	2023CK-01620	Pseudomonas aeruginosa
GCA_034120925.2		1	SAMN38646036	2023CK-01480	Pseudomonas aeruginosa
GCA_028622895.1		1	SAMN32733991	2022CK-00828	Pseudomonas aeruginosa
GCA_025399155.1		2	SAMN20960129	2021CK-01281	Pseudomonas aeruginosa
GCA_025290945.1	JAOCZN000000000		SAMN14792021	2019CK-00016	Pseudomonas aeruginosa
GCA_025790885.1		1	SAMN14792039	2019CK-00034	Pseudomonas aeruginosa
GCA_028366415.3		1	SAMN32978019	2023CK-00048	Pseudomonas aeruginosa
GCA_032292255.2		1	SAMN37649568	2023CK-01249	Pseudomonas aeruginosa
GCA_036326305.1		1	SAMN39122631	2023CK-01621	Pseudomonas aeruginosa
GCA_035621175.1		1	SAMN38122038	2023CK-01336	Pseudomonas aeruginosa
GCA_039880285.1		4	SAMN39595399	2024CK-00038	Pseudomonas kurunegalensis
GCA_045347765.1		2	SAMN40557196	2024CK-1945753	Salmonella enterica
GCA_045347675.1		2	SAMN40557195	2024CK-1945744	Salmonella enterica
GCA_045040835.1		2	SAMN30524885	PNUSAS295274	Salmonella enterica subsp. enterica serovar Hadar
GCA_025399015.1		2	SAMN13354303	PNUSAS118466	Salmonella enterica
GCA_025398995.1		1	SAMN08773568	PNUSAS036471	Salmonella enterica
GCA_025399075.1		2	SAMN30839144	1020677	Salmonella enterica
GCA_025399055.1		2	SAMN30839143	1019942	Salmonella enterica
GCA_025259525.1		3	SAMN09744916	PNUSAS048232	Salmonella enterica
GCA_025259345.1		2	SAMN08135025	PNUSAS028809	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_025259185.1		4	SAMN13354305	PNUSAS118606	Salmonella enterica
GCA_025259065.1		4	SAMN13390196	PNUSAS119065	Salmonella enterica
GCA_029953555.1		4	SAMN34404588	PNUSAS118467	Salmonella enterica
GCA_034494365.1		1	SAMN31822672	PNUSAS318075	Salmonella enterica subsp. enterica serovar Hadar
GCA_034493545.1		4	SAMN36182991	PNUSAS360131	Salmonella enterica subsp. enterica serovar Hadar
GCA_034491365.1		1	SAMN24009623	PNUSAS249879	Salmonella enterica subsp. enterica serovar Hadar
GCA_018311215.2		3	SAMN19088490	PNUSAS200857	Salmonella enterica
GCA_019105565.2		4	SAMN20057411	PNUSAS210186	Salmonella enterica
GCA_006287295.2		3	SAMN09091327	PNUSAS040124	Salmonella enterica
GCA_036760465.2		1	SAMN39998258	2024CK-00127	Serratia marcescens
GCA_036080955.2		3	SAMN39595405	2024CK-00068	Shigella sonnei
GCA_031657875.2		1	SAMN37442940	2023CK-01135	Stenotrophomonas maltophilia
GCA_025258945.1		2	SAMN13878425	PNUSAV001141	Vibrio cholerae
GCA_025258925.1		2	SAMN13878423	PNUSAV001140	Vibrio cholerae

SRA Data Details

Parameter	Value
Data volume, Gbases	208
Data volume, Tbytes	0.18

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UPHL Gram-negative bacteria

Assorted bacteria with public health implications

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