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Accession: PRJNA783162 ID: 783162

IEGM Regional Specialised Collection of Alkanotrophic Microorganisms

Development of a sustainable strategy for remediation of hydrocarbon-contaminated territories based on the waste exchange concept.

The project is based on the biotechnological potential of the Regional Specialized Collection of Alkanotrophic Microorganisms (acronim IEGM, http://www. More...
AccessionPRJNA783162
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Krivoruchko A et al., "Rhodococcus Strains from the Specialized Collection of Alkanotrophs for Biodegradation of Aromatic Compounds.", Molecules, 2023 Mar 5;28(5)
  • Published online: Litvinenko L "Ability of the Dietzia, Gordonia and Rhodococcus Actinobacteria to Accumulate Nickel Ions", Microbiology, 2019;88(2):191-199
Grants
  • "Features of "pharma pollutant - microorganism" relationship and efficiency evaluation of protection mechanisms triggered in bacterial cells exposed to pharmaceuticals" (Grant ID 21-14-00132, Russian Science Foundation)
  • "Mechanisms of biodegradation and inactivation of complex contamination of ecosystems with hydrocarbons and heavy metals" (Grant ID 20-44-596001, Russian Foundation for Basic Research)
  • "Development of a sustainable strategy for remediation of hydrocarbon-contaminated territories based on the waste exchange concept" (Grant ID C-26/827, Perm Krai Government grant)
  • "Development of a sustainable strategy for remediation of hydrocarbon-contaminated territories based on the waste exchange concept" (Grant ID С-26/174, Perm Krai Government grant)
SubmissionRegistration date: 24-Nov-2021
INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)110
SRA Experiments11
Publications
PubMed1
PMC1
Other datasets
BioSample122
Assembly110
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
109
1
110
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_027270865.1ScaffoldJAPWIF000000000SAMN32240006
IEGM 1410
Dietzia kunjamensis
GCA_030063735.1ScaffoldJASIRP000000000SAMN35083990
IEGM 747
Dietzia kunjamensis
GCA_033042305.1ScaffoldJAWLKJ000000000SAMN37898661
IEGM 1175
Dietzia maris
GCA_027270575.1ScaffoldJAPWIO000000000SAMN32240015
IEGM 44
Dietzia maris
GCA_030063815.1ScaffoldJASIRQ000000000SAMN35083989
IEGM 1277
Gordonia alkanivorans
GCA_030057195.1ScaffoldJASHLM000000000SAMN35083986
IEGM 1269
Gordonia alkanivorans
GCA_030057175.1ScaffoldJASHLK000000000SAMN35083988
IEGM 748
Gordonia alkanivorans
GCA_030058695.1ScaffoldJASHLL000000000SAMN35083987
IEGM 1398
Gordonia alkanivorans
GCA_033101335.1ScaffoldJAWLUL000000000SAMN37898687
IEGM 1264
Gordonia amicalis
GCA_033101315.1ScaffoldJAWLUJ000000000SAMN37898697
IEGM 1377
Gordonia amicalis
GCA_033101175.1ScaffoldJAWLUI000000000SAMN37898698
IEGM 1394
Gordonia amicalis
GCA_033042315.1ScaffoldJAWLKI000000000SAMN37898662
IEGM 1266
Gordonia amicalis
GCA_033042335.1ScaffoldJAWLKH000000000SAMN37898663
IEGM 1279
Gordonia amicalis
GCA_030063505.1ScaffoldJASIRD000000000SAMN35084022
IEGM 1400
Gordonia amicalis
GCA_027270715.1ScaffoldJAPWIL000000000SAMN32240012
IEGM 1276
Gordonia amicalis
GCA_027270895.1ScaffoldJAPWID000000000SAMN32240004
IEGM 1385
Gordonia amicalis
GCA_021026155.1ScaffoldJAJNDG000000000SAMN23420019
IEGM 735
Gordonia paraffinivorans
GCA_027270835.1ScaffoldJAPWIE000000000SAMN32240005
IEGM 1388
Gordonia rubripertincta
GCA_027270515.1ScaffoldJAPWIN000000000SAMN32240014
IEGM 136
Gordonia terrae
GCA_030056775.1ScaffoldJASHKP000000000SAMN35084023
IEGM 1404
Microbacterium sp. IEGM 1404
GCA_033101375.1ScaffoldJAWLUK000000000SAMN37898691
IEGM 1325
Micrococcus yunnanensis
GCA_030057095.1ScaffoldJASHLH000000000SAMN35083997
IEGM 1233
Rhodococcoides fascians
GCA_030063685.1ScaffoldJASIRL000000000SAMN35083996
IEGM 712
Rhodococcoides fascians
GCA_030063615.1ScaffoldJASIRH000000000SAMN35084003
IEGM 1122
Rhodococcoides fascians
GCA_030063535.1ScaffoldJASIRF000000000SAMN35084009
IEGM 455
Rhodococcoides fascians
GCA_033101355.1ScaffoldJAWLUV000000000SAMN37898667
IEGM 1202
Rhodococcoides kroppenstedtii
GCA_033042415.1ScaffoldJAWLJX000000000SAMN37898682
IEGM 1323
Rhodococcoides yunnanense
GCA_033042295.1ScaffoldJAWLKG000000000SAMN37898664
IEGM 1367
Rhodococcus aetherivorans
GCA_033042195.1ScaffoldJAWLKF000000000SAMN37898665
IEGM 1327
Rhodococcus cerastii
GCA_021026135.1ScaffoldJAJNDD000000000SAMN23420021
IEGM 1243
Rhodococcus cerastii
GCA_033042225.1ScaffoldJAWLKE000000000SAMN37898666
IEGM 1322
Rhodococcus cercidiphylli
GCA_033042255.1ScaffoldJAWLKC000000000SAMN37898669
IEGM 1321
Rhodococcus erythropolis
GCA_033042395.1ScaffoldJAWLKD000000000SAMN37898668
IEGM 1020
Rhodococcus erythropolis
GCA_030063525.1ScaffoldJASIRE000000000SAMN35084010
IEGM 91
Rhodococcus erythropolis
GCA_030057155.1ScaffoldJASHLJ000000000SAMN35083993
IEGM 487
Rhodococcus erythropolis
GCA_030057135.1ScaffoldJASHLI000000000SAMN35083994
IEGM 788
Rhodococcus erythropolis
GCA_027270535.1ScaffoldJAPWIQ000000000SAMN32240017
IEGM 1415
Rhodococcus erythropolis
GCA_027270845.1ScaffoldJAPWIH000000000SAMN32240008
IEGM 1399
Rhodococcus erythropolis
GCA_027270815.1ScaffoldJAPWIG000000000SAMN32240007
IEGM 1189
Rhodococcus erythropolis
GCA_033042205.1ScaffoldJAWLKB000000000SAMN37898670
IEGM 1203
Rhodococcus globerulus
GCA_033042455.1ScaffoldJAWLKA000000000SAMN37898676
IEGM 60
Rhodococcus jostii
GCA_027270595.1ScaffoldJAPWIR000000000SAMN32240018
IEGM 1396
Rhodococcus maanshanensis
GCA_033042375.1ScaffoldJAWLJZ000000000SAMN37898678
IEGM 2226
Rhodococcus opacus
GCA_033101455.1ScaffoldJAWLUN000000000SAMN37898681
IEGM 1171
Rhodococcus opacus
GCA_027270625.1ScaffoldJAPWIS000000000SAMN32240019
IEGM 249
Rhodococcus opacus
GCA_030063585.1ScaffoldJASIRG000000000SAMN35084004
IEGM 1141
Rhodococcus opacus
GCA_033101395.1ScaffoldJAWLUS000000000SAMN37898673
IEGM 30
Rhodococcus oxybenzonivorans
GCA_033101215.1ScaffoldJAWLUU000000000SAMN37898671
IEGM 28
Rhodococcus oxybenzonivorans
GCA_033101195.1ScaffoldJAWLUR000000000SAMN37898674
IEGM 31
Rhodococcus oxybenzonivorans
GCA_033101295.1ScaffoldJAWLUT000000000SAMN37898672
IEGM 29
Rhodococcus oxybenzonivorans
GCA_033101275.1ScaffoldJAWLUP000000000SAMN37898677
IEGM 68
Rhodococcus oxybenzonivorans
GCA_033101255.1ScaffoldJAWLUQ000000000SAMN37898675
IEGM 32
Rhodococcus oxybenzonivorans
GCA_033101435.1ScaffoldJAWLUO000000000SAMN37898679
IEGM 1298
Rhodococcus pyridinivorans
GCA_021026105.1ScaffoldJAJNCQ000000000SAMN23420020
IEGM 1142
Rhodococcus pyridinivorans
GCA_021026055.1ScaffoldJAJNDE000000000SAMN23420023
IEGM 66
Rhodococcus pyridinivorans
GCA_030063645.1ScaffoldJASIRJ000000000SAMN35084000
IEGM 1363
Rhodococcus pyridinivorans
GCA_027270615.1ScaffoldJAPWIT000000000SAMN32240020
IEGM 639
Rhodococcus pyridinivorans
GCA_027270775.1ScaffoldJAPWII000000000SAMN32240009
IEGM 1137
Rhodococcus pyridinivorans
GCA_021025955.1ScaffoldJAJNCL000000000SAMN23420028
IEGM 1359
Rhodococcus qingshengii
GCA_021026075.1ScaffoldJAJNDF000000000SAMN23420022
IEGM 746
Rhodococcus qingshengii
GCA_027270755.1ScaffoldJAPWIK000000000SAMN32240011
IEGM 766
Rhodococcus qingshengii
GCA_027270525.1ScaffoldJAPWIP000000000SAMN32240016
IEGM 708
Rhodococcus qingshengii
GCA_030063725.1ScaffoldJASIRM000000000SAMN35083995
IEGM 1348
Rhodococcus qingshengii
GCA_030063715.1ScaffoldJASIRO000000000SAMN35083991
IEGM 751
Rhodococcus qingshengii
GCA_030063705.1ScaffoldJASIRN000000000SAMN35083992
IEGM 190
Rhodococcus qingshengii
GCA_021026035.1ScaffoldJAJNCP000000000SAMN23420024
IEGM 107
Rhodococcus rhodochrous
GCA_021026015.1ScaffoldJAJNCN000000000SAMN23420026
IEGM 1360
Rhodococcus rhodochrous
GCA_021026175.1ScaffoldJAJNCO000000000SAMN23420025
IEGM 757
Rhodococcus rhodochrous
GCA_030063665.1ScaffoldJASIRK000000000SAMN35083998
IEGM 38
Rhodococcus rhodochrous
GCA_030057105.1ScaffoldJASHLG000000000SAMN35083999
IEGM 1161
Rhodococcus rhodochrous
GCA_033042435.1ScaffoldJAWLJY000000000SAMN37898680
IEGM 1263
Rhodococcus ruber
GCA_021025995.1ScaffoldJAJNCM000000000SAMN23420027
IEGM 346
Rhodococcus ruber
GCA_027270695.1ScaffoldJAPWIV000000000SAMN32240022
IEGM 442
Rhodococcus ruber
GCA_027270655.1ScaffoldJAPWIU000000000SAMN32240021
IEGM 439
Rhodococcus ruber
GCA_027270455.1ScaffoldJAPWIW000000000SAMN32240023
IEGM 476
Rhodococcus ruber
GCA_027270735.1ScaffoldJAPWIJ000000000SAMN32240010
IEGM 1391
Rhodococcus ruber
GCA_030057065.1ScaffoldJASHLF000000000SAMN35084002
IEGM 1121
Rhodococcus ruber
GCA_030057055.1ScaffoldJASHLB000000000SAMN35084008
IEGM 560
Rhodococcus ruber
GCA_030057035.1ScaffoldJASHLE000000000SAMN35084005
IEGM 1156
Rhodococcus ruber
GCA_030057015.1ScaffoldJASHLD000000000SAMN35084006
IEGM 1211
Rhodococcus ruber
GCA_030056995.1ScaffoldJASHLC000000000SAMN35084007
IEGM 333
Rhodococcus ruber
GCA_030063605.1ScaffoldJASIRI000000000SAMN35084001
IEGM 63
Rhodococcus ruber
GCA_030056975.1ScaffoldJASHLA000000000SAMN35084011
IEGM 1237
Rhodococcus sp. IEGM 1237
GCA_033142365.1ScaffoldJAWLSE000000000SAMN37898686
IEGM 1241
Rhodococcus sp. IEGM 1241
GCA_030056955.1ScaffoldJASHKZ000000000SAMN35084012
IEGM 1251
Rhodococcus sp. IEGM 1251
GCA_030056935.1ScaffoldJASHKY000000000SAMN35084013
IEGM 1302
Rhodococcus sp. IEGM 1302
GCA_033142345.1ScaffoldJAWLSD000000000SAMN37898688
IEGM 1304
Rhodococcus sp. IEGM 1304
GCA_030058635.1ScaffoldJASHKX000000000SAMN35084014
IEGM 1305
Rhodococcus sp. IEGM 1305
GCA_036541985.1ScaffoldJAZHFF000000000SAMN37898689
IEGM 1306
Rhodococcus sp. IEGM 1306
GCA_030056915.1ScaffoldJASHKW000000000SAMN35084015
IEGM 1307
Rhodococcus sp. IEGM 1307
GCA_033142465.1ScaffoldJAWLSC000000000SAMN37898690
IEGM 1318
Rhodococcus sp. IEGM 1318
GCA_033142445.1ScaffoldJAWLSB000000000SAMN37898692
IEGM 1330
Rhodococcus sp. IEGM 1330
GCA_030056895.1ScaffoldJASHKV000000000SAMN35084016
IEGM 1341
Rhodococcus sp. IEGM 1341
GCA_033142395.1ScaffoldJAWLSA000000000SAMN37898693
IEGM 1343
Rhodococcus sp. IEGM 1343
GCA_030056875.1ScaffoldJASHKU000000000SAMN35084017
IEGM 1351
Rhodococcus sp. IEGM 1351
GCA_030056855.1ScaffoldJASHKT000000000SAMN35084018
IEGM 1354
Rhodococcus sp. IEGM 1354
GCA_033142425.1ScaffoldJAWLRZ000000000SAMN37898694
IEGM 1366
Rhodococcus sp. IEGM 1366
GCA_033142325.1ScaffoldJAWLRY000000000SAMN37898695
IEGM 1370
Rhodococcus sp. IEGM 1370
GCA_030056835.1ScaffoldJASHKS000000000SAMN35084019
IEGM 1372
Rhodococcus sp. IEGM 1372
GCA_033142385.1ScaffoldJAWLRX000000000SAMN37898696
IEGM 1374
Rhodococcus sp. IEGM 1374
GCA_030056815.1ScaffoldJASHKR000000000SAMN35084020
IEGM 1379
Rhodococcus sp. IEGM 1379
GCA_030056795.1ContigJASHKQ000000000SAMN35084021
IEGM 1381
Rhodococcus sp. IEGM 1381
GCA_027270635.1ScaffoldJAPWIM000000000SAMN32240013
IEGM 1401
Rhodococcus sp. IEGM 1401
GCA_030056745.1ScaffoldJASHKO000000000SAMN35084024
IEGM 1406
Rhodococcus sp. IEGM 1406
GCA_033142235.1ScaffoldJAWLRW000000000SAMN37898699
IEGM 1408
Rhodococcus sp. IEGM 1408
GCA_030056735.1ScaffoldJASHKN000000000SAMN35084025
IEGM 1409
Rhodococcus sp. IEGM 1409
GCA_033142485.1ScaffoldJAWLRV000000000SAMN37898700
IEGM 1414
Rhodococcus sp. IEGM 1414
GCA_033142305.1ScaffoldJAWLSG000000000SAMN37898683
IEGM 27
Rhodococcus sp. IEGM 27
GCA_033142265.1ScaffoldJAWLSF000000000SAMN37898684
IEGM 69
Rhodococcus sp. IEGM 69
GCA_033101235.1ScaffoldJAWLUM000000000SAMN37898685
IEGM 1236
Williamsia muralis
SRA Data Details
ParameterValue
Data volume, Gbases50
Data volume, Mbytes16698

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