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Accession: PRJNA46333 ID: 46333

human skin metagenome

Gene-Environment Interactions at the Skin Surface

16S rRNA gene sequences amplified from subjects with eczema and age-matched healthy controls. More...
AccessionPRJNA46333; dbGaP: phs000266
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhuman skin metagenome[Taxonomy ID: 539655]
unclassified sequences; metagenomes; organismal metagenomes; human skin metagenome
Publications (total 8)
  • Saheb Kashaf S et al., "Staphylococcal diversity in atopic dermatitis from an individual to a global scale.", Cell Host Microbe, 2023 Apr 12;31(4):578-592.e6
More...
SubmissionRegistration date: 2-May-2023
NISC - NIH Intramural Sequencing Center
NCBI Links
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)297955
WGS master624
Genomic DNA297331
SRA Experiments4615
Protein Sequences5543
Publications
PubMed8
PMC8
Other datasets
BioSample5894
Genotype and Phenotype (dbGaP)1
Assembly624
Assembly details:
Assembly levelNumber of Assemblies
624
624
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_029921615.1ContigJARDJM000000000SAMN31818939
ADQDZ
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ACVAA
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ACVAB
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ACVAD
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ACVAC
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ACVAE
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ACVAF
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ACVAH
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ACUZY
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ACUZZ
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ACVHF
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ACVAG
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ADTVY
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ADTVZ
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ADTWA
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ADTWC
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ADTWB
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ADTWD
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ACVES
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ACVEU
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ACVET
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ACVEY
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ACVFC
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ACVFD
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ACVFE
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ACVFF
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ACVFZ
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ACVFI
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ACVFG
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ACVFQ
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ACVFH
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ACVFR
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ACVFO
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ACVFS
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ACVFV
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ACVFU
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ACVFT
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ACVFX
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ACVFY
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ADTWE
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ADTWF
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ACVBY
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ACVEX
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ACVFJ
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ACVFK
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ACVFM
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ACVFL
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ACVFN
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ACVGA
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ACVGB
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ACVGD
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ACVGC
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ADTUN
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ADTUO
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ADTUP
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ADTUR
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ADTVC
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ADTVJ
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ADTVI
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ADTVK
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ADTVL
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ADTVR
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ADTVQ
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ADTVM
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ADTVN
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ADTVS
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ADTVT
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ADTVU
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ACVFP
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ADTUQ
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ADTVV
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ADTVW
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ACVAI
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ACVAL
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ACVAO
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ACVAM
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ACVAN
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ACVAP
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ACVAS
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ACVAQ
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ACVAR
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ACVAT
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ACVAU
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ACVAV
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ACVAW
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ACVAX
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ACVAY
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ACVBA
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ACVAZ
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ACVBB
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ACVBC
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ACVBD
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ACVBE
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ACVCB
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ACVBG
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ACVBH
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ACVBF
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ACVBJ
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ACVBI
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ACVBM
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ACVBL
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ACVBN
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ACVBO
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ACVBP
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ACVBS
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ACVBQ
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ACVBR
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ACVBT
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ACVBU
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ACVBV
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ACVBX
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ACVBW
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ACVBZ
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ACVCA
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ACVCD
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ACVCC
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AACOJ
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ACVAJ
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ACVAK
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ADTUS
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ADTUT
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ADTUU
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ADTUV
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ADTUW
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ADTUX
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ADTUY
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ADTUZ
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ADTVA
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ADTVB
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ADTUL
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ADTUM
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ADTUK
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ADTVX
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ACVHG
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ACVHH
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ADPUH
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ADPUZ
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ADPXQ
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ADPXP
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ADPVN
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ACVEN
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ACVCF
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ACVCJ
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ACVCK
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ACVCH
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ACVCG
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ACVCI
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ACVCL
GCA_029926435.1ContigJAREHK000000000SAMN31818689
ACVGQ
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ACVGN
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ACVGO
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ACVFA
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ACVGX
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ACVGY
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ACVHC
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ACVHD
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ACVFB
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ACVEO
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ACVEP
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ACVEQ
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ACVEM
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ADTVG
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ADTVF
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ADTVE
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ADTVH
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ACVDE
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ACVCN
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ACVCP
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ACVCE
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ACVBK
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ACVCO
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ACVCQ
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ACVDB
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ACVDA
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ACVDM
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ACVDF
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ACVEL
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ADPUI
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ACVEZ
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ACVEV
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ADTWG
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ACVCX
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ACVCR
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ACVCU
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ACVCZ
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ACVDI
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ACVDP
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ACVDK
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ACVDR
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ACVDS
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ACVDT
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ACVDV
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ACVDU
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ACVDW
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ACVDX
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ACVDY
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ACVDZ
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ACVER
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ACVHA
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ACVHB
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ACVGZ
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ACVGW
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ACVGV
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ACVGU
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ACVGT
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ADTWH
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ACVFW
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ACVEW
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AACOK
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ACVEK
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ACVGI
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ACVGH
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ACVGM
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ADTVD
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ACVCT
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ACVCV
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ACVCW
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ACVDC
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ACVCY
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ACVDD
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ACVDG
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ACVDH
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ACVDJ
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ACVDL
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ACVDN
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ACVDO
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ACVDQ
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ACVEA
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ACVEB
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ACVEC
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ACVED
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ACVEE
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ACVEF
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ACVEG
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ACVCS
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ACVGL
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ACVGJ
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ACVGK
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AACOI
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ADQEC
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ADQEE
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ADQED
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ADQEG
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ADQEF
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ADQEH
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ADQEI
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ADQEJ
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ADQEK
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ADQEL
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ADQEP
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ADQEQ
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ADQEN
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ADQEO
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ADQER
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ADQEV
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ADQEU
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ADQET
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ADQES
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ADQEW
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ADQEX
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ADQEZ
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ADQEY
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ADQFB
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ADQFA
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ADQFC
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ADQFE
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ADQFF
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ADQFD
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ADQFG
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ADQFH
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ADQFI
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ADQFJ
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ADQFM
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ADTUA
GCA_029924355.1ContigJARDOE000000000SAMN31819061
ADTTJ
GCA_029924325.1ContigJARDOX000000000SAMN31819080
ADTUC
GCA_029924285.1ContigJARDOY000000000SAMN31819081
ADTUD
GCA_029924275.1ContigJARDOZ000000000SAMN31819082
ADTUE
GCA_029924265.1ContigJARDPA000000000SAMN31819083
ADTUF
GCA_029924245.1ContigJARDPB000000000SAMN31819084
ADTUG
GCA_029924225.1ContigJARDPC000000000SAMN31819085
ADTUH
GCA_029919965.1ContigJARDIC000000000SAMN31818908
ADQCT
GCA_029919955.1ContigJARDID000000000SAMN31818909
ADQCU
GCA_029919945.1ContigJARDIB000000000SAMN31818907
ADQCS
GCA_029919925.1ContigJARDIF000000000SAMN31818911
ADQCW
GCA_029919905.1ContigJARDIE000000000SAMN31818910
ADQCV
GCA_029919865.1ContigJARDIG000000000SAMN31818912
ADQCX
GCA_029919855.1ContigJARDIH000000000SAMN31818913
ADQCY
GCA_029919845.1ContigJARDII000000000SAMN31818914
ADQCZ
GCA_029919805.1ContigJARDIK000000000SAMN31818916
ADQDB
GCA_029919825.1ContigJARDIJ000000000SAMN31818915
ADQDA
GCA_029919785.1ContigJARDIL000000000SAMN31818917
ADQDC
GCA_029919765.1ContigJARDIR000000000SAMN31818923
ADQDI
GCA_029919745.1ContigJARDIM000000000SAMN31818918
ADQDD
GCA_029919715.1ContigJARDIP000000000SAMN31818921
ADQDG
GCA_029919705.1ContigJARDIN000000000SAMN31818919
ADQDE
GCA_029919665.1ContigJARDIQ000000000SAMN31818922
ADQDH
GCA_029919675.1ContigJARDIO000000000SAMN31818920
ADQDF
GCA_029919645.1ContigJARDIS000000000SAMN31818924
ADQDJ
GCA_029919615.1ContigJARDIV000000000SAMN31818927
ADQDM
GCA_029919605.1ContigJARDIT000000000SAMN31818925
ADQDK
GCA_029919585.1ContigJARDIW000000000SAMN31818928
ADQDN
GCA_029919555.1ContigJARDIZ000000000SAMN31818931
ADQDQ
GCA_029919545.1ContigJARDIY000000000SAMN31818930
ADQDP
GCA_029919525.1ContigJARDJA000000000SAMN31818932
ADQDR
GCA_029919505.1ContigJARDJB000000000SAMN31818933
ADQDS
GCA_029919485.1ContigJARDJD000000000SAMN31818935
ADQDU
GCA_029919465.1ContigJARDJC000000000SAMN31818934
ADQDT
GCA_029919445.1ContigJARDAP000000000SAMN31818707
ADPTN
GCA_029919405.1ContigJARDAQ000000000SAMN31818708
ADPTO
GCA_029919415.1ContigJARDBI000000000SAMN31818726
ADPUG
GCA_029919385.1ContigJARDAU000000000SAMN31818712
ADPTS
GCA_029919345.1ContigJARDAR000000000SAMN31818709
ADPTP
GCA_029919355.1ContigJARDAT000000000SAMN31818711
ADPTR
GCA_029919325.1ContigJARDAS000000000SAMN31818710
ADPTQ
GCA_029918995.1ContigJARDBN000000000SAMN31818731
ADPUL
GCA_029926915.1ContigJAREFB000000000SAMN31818628
ACVEH
GCA_029926905.1ContigJAREFC000000000SAMN31818629
ACVEI
GCA_029926865.1ContigJAREFD000000000SAMN31818630
ACVEJ
GCA_029924925.1ContigJAREHY000000000SAMN31818703
ACVHE
GCA_029920005.1ContigJARDIA000000000SAMN31818906
ADQCR
GCA_029918745.1ContigJARDBW000000000SAMN31818740
ADPUU
GCA_029918815.1ContigJARDBU000000000SAMN31818738
ADPUS
GCA_029918785.1ContigJARDBT000000000SAMN31818737
ADPUR
GCA_029918605.1ContigJARDCD000000000SAMN31818747
ADPVB
GCA_029918565.1ContigJARDCF000000000SAMN31818749
ADPVD
GCA_029918555.1ContigJARDCG000000000SAMN31818750
ADPVE
GCA_029918655.1ContigJARDCC000000000SAMN31818746
ADPVA
GCA_029919035.1ContigJARDBH000000000SAMN31818725
ADPUF
GCA_029918715.1ContigJARDBY000000000SAMN31818742
ADPUW
GCA_029929545.1ContigJAREHL000000000SAMN31818690
ACVGR
GCA_029929625.1ContigJAREDG000000000SAMN31818581
ACVCM
GCA_029925185.1ContigJAREHM000000000SAMN31818691
ACVGS
GCA_029925195.1ContigJAREHJ000000000SAMN31818688
ACVGP
GCA_029926605.1ContigJAREGY000000000SAMN31818677
ACVGE
GCA_029926565.1ContigJAREHA000000000SAMN31818679
ACVGG
GCA_029926535.1ContigJAREGZ000000000SAMN31818678
ACVGF
GCA_029920105.1ContigJARDHV000000000SAMN31818901
ADQCM
SRA Data Details
ParameterValue
Data volume, Gbases6,212
Data volume, Tbytes3.18

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